miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 47471 0.73 0.3438
Target:  5'- aCGCGccggCGGCgACUGCCG-CGCuGAACGa -3'
miRNA:   3'- -GCGCua--GCUG-UGACGGCaGCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 47025 0.7 0.462237
Target:  5'- cCGCGAUCGgauauGCAgUGCaaCGUCGCGcGCa -3'
miRNA:   3'- -GCGCUAGC-----UGUgACG--GCAGCGCuUGc -5'
17017 5' -55.2 NC_004333.2 + 46152 0.73 0.327627
Target:  5'- aCGUGAUCGAUGCgGCCGUgaCGuCGGGCa -3'
miRNA:   3'- -GCGCUAGCUGUGaCGGCA--GC-GCUUGc -5'
17017 5' -55.2 NC_004333.2 + 45421 0.7 0.472222
Target:  5'- aCGCGAcCGGCACgGCgGcCGCGAucuCGg -3'
miRNA:   3'- -GCGCUaGCUGUGaCGgCaGCGCUu--GC- -5'
17017 5' -55.2 NC_004333.2 + 45261 0.7 0.502804
Target:  5'- aGCGcgCGugGC-GCCuuggcUCGCGAACGa -3'
miRNA:   3'- gCGCuaGCugUGaCGGc----AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 45029 0.68 0.587963
Target:  5'- cCGCGcgUGGCGCUGgCGgCGCGcaAACGc -3'
miRNA:   3'- -GCGCuaGCUGUGACgGCaGCGC--UUGC- -5'
17017 5' -55.2 NC_004333.2 + 44501 0.76 0.218505
Target:  5'- aCGCGA-CGGCuCaGaCCGUCGCGAACGa -3'
miRNA:   3'- -GCGCUaGCUGuGaC-GGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 43322 0.68 0.620712
Target:  5'- aGCGGcaUCGGCACgGCgCG-CGCGuACGg -3'
miRNA:   3'- gCGCU--AGCUGUGaCG-GCaGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 42758 0.69 0.527876
Target:  5'- uGcCGA-CGACGCUGCCGcgauggcagaagaaCGCGAACa -3'
miRNA:   3'- gC-GCUaGCUGUGACGGCa-------------GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 41571 0.68 0.598854
Target:  5'- uGCGAcugCGGCGCUgggcggcgcGCCGUgGCGGcgauGCGg -3'
miRNA:   3'- gCGCUa--GCUGUGA---------CGGCAgCGCU----UGC- -5'
17017 5' -55.2 NC_004333.2 + 41530 0.67 0.642608
Target:  5'- gCGCGccgagCG-CGCUGCCGagCGCGAuCGa -3'
miRNA:   3'- -GCGCua---GCuGUGACGGCa-GCGCUuGC- -5'
17017 5' -55.2 NC_004333.2 + 41449 0.72 0.395688
Target:  5'- aCGCGggCGAguCgGCCGUCGUGAuccaugGCGa -3'
miRNA:   3'- -GCGCuaGCUguGaCGGCAGCGCU------UGC- -5'
17017 5' -55.2 NC_004333.2 + 41385 0.69 0.534218
Target:  5'- gGCGAagaUCGGCGC-GCUGUCGUauGCGa -3'
miRNA:   3'- gCGCU---AGCUGUGaCGGCAGCGcuUGC- -5'
17017 5' -55.2 NC_004333.2 + 40501 0.66 0.695926
Target:  5'- cCGUGGUCGGguucgccggcaguCGaaGCgGUCGUGAACGa -3'
miRNA:   3'- -GCGCUAGCU-------------GUgaCGgCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 39686 0.73 0.327627
Target:  5'- aCGCGGacgUUGugGCUggcucGCCGUCGCGAgguACGa -3'
miRNA:   3'- -GCGCU---AGCugUGA-----CGGCAGCGCU---UGC- -5'
17017 5' -55.2 NC_004333.2 + 39636 0.75 0.255285
Target:  5'- aGCGGcCGACuGCUGCCGgaCGCGAACu -3'
miRNA:   3'- gCGCUaGCUG-UGACGGCa-GCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 39487 0.68 0.620712
Target:  5'- -aCGGUCGGCACguucGCCGU-GCuGAACGc -3'
miRNA:   3'- gcGCUAGCUGUGa---CGGCAgCG-CUUGC- -5'
17017 5' -55.2 NC_004333.2 + 39236 0.79 0.141985
Target:  5'- aCGCGAUgGACAgcGCCGgCGCGAACGa -3'
miRNA:   3'- -GCGCUAgCUGUgaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 38987 1.1 0.000971
Target:  5'- cCGCGAUCGACACUGCCGUCGCGAACGa -3'
miRNA:   3'- -GCGCUAGCUGUGACGGCAGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 38554 0.66 0.707739
Target:  5'- aCGCGcucaCGGCaacgacacaGCUGCUGuUCGCGGGCa -3'
miRNA:   3'- -GCGCua--GCUG---------UGACGGC-AGCGCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.