miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17024 3' -56.3 NC_004333.2 + 34091 0.66 0.666336
Target:  5'- cAUGACG-AUCGCGCUgcaucagcuuuGCCUgcgcaccccCAUCGCu -3'
miRNA:   3'- -UGCUGCuUGGCGCGG-----------CGGAa--------GUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 24463 0.66 0.622619
Target:  5'- cCGACGcAACuCGCGCgaGCCa--AUCGCu -3'
miRNA:   3'- uGCUGC-UUG-GCGCGg-CGGaagUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 466 0.66 0.622619
Target:  5'- cGCGACGuGCCgGCGagCGUgaacgCUUCGUCGUa -3'
miRNA:   3'- -UGCUGCuUGG-CGCg-GCG-----GAAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 17484 0.66 0.611686
Target:  5'- -gGACGAAgUUGcCGCCGCCggCGgcggCGCg -3'
miRNA:   3'- ugCUGCUU-GGC-GCGGCGGaaGUa---GCG- -5'
17024 3' -56.3 NC_004333.2 + 14224 0.66 0.611686
Target:  5'- cGCGACGGGCaucacgGUGCCGUCUgg--CGUa -3'
miRNA:   3'- -UGCUGCUUGg-----CGCGGCGGAaguaGCG- -5'
17024 3' -56.3 NC_004333.2 + 30233 0.66 0.611686
Target:  5'- uCGACGcGCCGCGC-GCgaUCAgUGCg -3'
miRNA:   3'- uGCUGCuUGGCGCGgCGgaAGUaGCG- -5'
17024 3' -56.3 NC_004333.2 + 32210 0.66 0.611686
Target:  5'- cGCGAUGAGCa-CGUCGCCgagcgUCuugagcUCGCg -3'
miRNA:   3'- -UGCUGCUUGgcGCGGCGGa----AGu-----AGCG- -5'
17024 3' -56.3 NC_004333.2 + 8990 0.66 0.611686
Target:  5'- cGCGGCGGcgACCGaCGCgGCgUUCGcggcUUGCc -3'
miRNA:   3'- -UGCUGCU--UGGC-GCGgCGgAAGU----AGCG- -5'
17024 3' -56.3 NC_004333.2 + 27597 0.66 0.611686
Target:  5'- gACGuCGAAUagCGCGgCGCCUUC--UGCa -3'
miRNA:   3'- -UGCuGCUUG--GCGCgGCGGAAGuaGCG- -5'
17024 3' -56.3 NC_004333.2 + 5175 0.66 0.63356
Target:  5'- -aGACGAaauaGCCaucggucgagaGCGCCGCCcgcUCGUcCGCc -3'
miRNA:   3'- ugCUGCU----UGG-----------CGCGGCGGa--AGUA-GCG- -5'
17024 3' -56.3 NC_004333.2 + 7456 0.66 0.63356
Target:  5'- aGCGACuuGCCGcCGCCGgUgaCgAUCGCg -3'
miRNA:   3'- -UGCUGcuUGGC-GCGGCgGaaG-UAGCG- -5'
17024 3' -56.3 NC_004333.2 + 27086 0.66 0.63356
Target:  5'- gACGGCGu-UCGUGaaGCCgcaCGUCGCa -3'
miRNA:   3'- -UGCUGCuuGGCGCggCGGaa-GUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 766 0.66 0.666336
Target:  5'- aGCGGCGAuguaGCUGCGaUUGCUUgcgCGUCGg -3'
miRNA:   3'- -UGCUGCU----UGGCGC-GGCGGAa--GUAGCg -5'
17024 3' -56.3 NC_004333.2 + 2988 0.66 0.666336
Target:  5'- gGCG-CGGACaGCuGCCGCUgcgCAUCaGCa -3'
miRNA:   3'- -UGCuGCUUGgCG-CGGCGGaa-GUAG-CG- -5'
17024 3' -56.3 NC_004333.2 + 14726 0.66 0.665247
Target:  5'- cCGGCGcGCCGCugccaauGCUGCCggacUCGCg -3'
miRNA:   3'- uGCUGCuUGGCG-------CGGCGGaaguAGCG- -5'
17024 3' -56.3 NC_004333.2 + 22225 0.66 0.655429
Target:  5'- aGCGccGCGuACUG-GCCGCCggCAUCGa -3'
miRNA:   3'- -UGC--UGCuUGGCgCGGCGGaaGUAGCg -5'
17024 3' -56.3 NC_004333.2 + 44259 0.66 0.655429
Target:  5'- uCGGCcugccGCCGCuGCCGCCUgg--CGCu -3'
miRNA:   3'- uGCUGcu---UGGCG-CGGCGGAaguaGCG- -5'
17024 3' -56.3 NC_004333.2 + 41253 0.66 0.6445
Target:  5'- cUGGCGc-CCGCGCaCGCCUcaaaCGUgCGCa -3'
miRNA:   3'- uGCUGCuuGGCGCG-GCGGAa---GUA-GCG- -5'
17024 3' -56.3 NC_004333.2 + 41129 0.66 0.6445
Target:  5'- uCGACGAGCUGCGC-GCacagUUCAaaccgaccgauUCGCc -3'
miRNA:   3'- uGCUGCUUGGCGCGgCGg---AAGU-----------AGCG- -5'
17024 3' -56.3 NC_004333.2 + 27608 0.66 0.63356
Target:  5'- cACGGCGcGACCcgacGCGCCGaCgaUCAgcggCGCg -3'
miRNA:   3'- -UGCUGC-UUGG----CGCGGC-GgaAGUa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.