miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17024 3' -56.3 NC_004333.2 + 72 0.67 0.557459
Target:  5'- gGCG-CGGugCGCgcgcccgguuGCCGCCUgcgccUCGUCGg -3'
miRNA:   3'- -UGCuGCUugGCG----------CGGCGGA-----AGUAGCg -5'
17024 3' -56.3 NC_004333.2 + 466 0.66 0.622619
Target:  5'- cGCGACGuGCCgGCGagCGUgaacgCUUCGUCGUa -3'
miRNA:   3'- -UGCUGCuUGG-CGCg-GCG-----GAAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 766 0.66 0.666336
Target:  5'- aGCGGCGAuguaGCUGCGaUUGCUUgcgCGUCGg -3'
miRNA:   3'- -UGCUGCU----UGGCGC-GGCGGAa--GUAGCg -5'
17024 3' -56.3 NC_004333.2 + 1230 0.69 0.444416
Target:  5'- uCGGCG---CGCGCCGCCUUgGcugCGCg -3'
miRNA:   3'- uGCUGCuugGCGCGGCGGAAgUa--GCG- -5'
17024 3' -56.3 NC_004333.2 + 1261 0.74 0.243769
Target:  5'- cAUGACGugcuccuuGgCGCGCCGCCUggcgcgCGUUGCg -3'
miRNA:   3'- -UGCUGCu-------UgGCGCGGCGGAa-----GUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 1950 0.67 0.568218
Target:  5'- cCGGCGAcgCGgGCCGCCUU-GUCGa -3'
miRNA:   3'- uGCUGCUugGCgCGGCGGAAgUAGCg -5'
17024 3' -56.3 NC_004333.2 + 2392 0.67 0.579028
Target:  5'- cAUGACGGcGCCgGCgGUCGCCUg-GUCGCc -3'
miRNA:   3'- -UGCUGCU-UGG-CG-CGGCGGAagUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 2621 0.73 0.25661
Target:  5'- cGCGACaGAccgACCGCGCgGU--UCAUCGCg -3'
miRNA:   3'- -UGCUG-CU---UGGCGCGgCGgaAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 2988 0.66 0.666336
Target:  5'- gGCG-CGGACaGCuGCCGCUgcgCAUCaGCa -3'
miRNA:   3'- -UGCuGCUUGgCG-CGGCGGaa-GUAG-CG- -5'
17024 3' -56.3 NC_004333.2 + 3045 0.69 0.467062
Target:  5'- gGCGACGAcagguaggcgcgaucGCCGCGCagacaggCGUCgagUAUCGCc -3'
miRNA:   3'- -UGCUGCU---------------UGGCGCG-------GCGGaa-GUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 3120 0.68 0.515083
Target:  5'- -gGGCGcGGCCGCGCgGUgUUCAgcguuugCGCg -3'
miRNA:   3'- ugCUGC-UUGGCGCGgCGgAAGUa------GCG- -5'
17024 3' -56.3 NC_004333.2 + 3381 0.74 0.250121
Target:  5'- aAUGuCGAcCgGCGUCGCCgUCGUCGCg -3'
miRNA:   3'- -UGCuGCUuGgCGCGGCGGaAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 3457 0.7 0.406553
Target:  5'- -aGuCGAGCUGCGCCucggcgaacGCCUUCAaguccuccaUCGCc -3'
miRNA:   3'- ugCuGCUUGGCGCGG---------CGGAAGU---------AGCG- -5'
17024 3' -56.3 NC_004333.2 + 3678 0.67 0.589882
Target:  5'- cGCGACGGuCUGaGCCGUCg-CGUCGUa -3'
miRNA:   3'- -UGCUGCUuGGCgCGGCGGaaGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 3792 0.67 0.600771
Target:  5'- uACcGCGca-CGCGCCGCCgagCAgCGCa -3'
miRNA:   3'- -UGcUGCuugGCGCGGCGGaa-GUaGCG- -5'
17024 3' -56.3 NC_004333.2 + 5000 0.69 0.484177
Target:  5'- aACGACGAcgACa-CGgUGCCUUCcGUCGCg -3'
miRNA:   3'- -UGCUGCU--UGgcGCgGCGGAAG-UAGCG- -5'
17024 3' -56.3 NC_004333.2 + 5175 0.66 0.63356
Target:  5'- -aGACGAaauaGCCaucggucgagaGCGCCGCCcgcUCGUcCGCc -3'
miRNA:   3'- ugCUGCU----UGG-----------CGCGGCGGa--AGUA-GCG- -5'
17024 3' -56.3 NC_004333.2 + 5644 0.68 0.536125
Target:  5'- gACGGCGAACuCGUaccaGuuGCCgUC-UCGCg -3'
miRNA:   3'- -UGCUGCUUG-GCG----CggCGGaAGuAGCG- -5'
17024 3' -56.3 NC_004333.2 + 6070 0.68 0.546759
Target:  5'- cUGGCGcACCucGCGacaCGCC-UCGUCGCg -3'
miRNA:   3'- uGCUGCuUGG--CGCg--GCGGaAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 6143 0.67 0.557459
Target:  5'- uCGGCGAGCaCGCcccgcucguugGCCGCgcgCUUCAcgCGCa -3'
miRNA:   3'- uGCUGCUUG-GCG-----------CGGCG---GAAGUa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.