miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17024 3' -56.3 NC_004333.2 + 36838 1.12 0.000466
Target:  5'- gACGACGAACCGCGCCGCCUUCAUCGCg -3'
miRNA:   3'- -UGCUGCUUGGCGCGGCGGAAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 45551 0.82 0.064821
Target:  5'- cGCGAUGAACCGCGCgGUCggUCuGUCGCg -3'
miRNA:   3'- -UGCUGCUUGGCGCGgCGGa-AG-UAGCG- -5'
17024 3' -56.3 NC_004333.2 + 23870 0.8 0.09664
Target:  5'- gACGACGAcguucggguUCGUGCCGCCgUUCAUCGUg -3'
miRNA:   3'- -UGCUGCUu--------GGCGCGGCGG-AAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 32894 0.78 0.11963
Target:  5'- cUGAUGcuGACCGCGCCGCCgcagcacggcaaaUCGUCGCu -3'
miRNA:   3'- uGCUGC--UUGGCGCGGCGGa------------AGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 29039 0.78 0.120971
Target:  5'- aGCG-CGAgcACCGCGCCGCCcaCgAUCGCg -3'
miRNA:   3'- -UGCuGCU--UGGCGCGGCGGaaG-UAGCG- -5'
17024 3' -56.3 NC_004333.2 + 8049 0.77 0.138958
Target:  5'- cCGACGAGCuCG-GCgGCCUUCAUCGg -3'
miRNA:   3'- uGCUGCUUG-GCgCGgCGGAAGUAGCg -5'
17024 3' -56.3 NC_004333.2 + 30292 0.77 0.142839
Target:  5'- gACGGCGAGCUG-GCCGCC---GUCGCg -3'
miRNA:   3'- -UGCUGCUUGGCgCGGCGGaagUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 37061 0.77 0.155081
Target:  5'- cCGGCGAGgcgauuUCGUGCCGCUgUUCGUCGCg -3'
miRNA:   3'- uGCUGCUU------GGCGCGGCGG-AAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 31143 0.77 0.158936
Target:  5'- cCGGCGAaugcaucGCCGC-CCGCCUuggCAUCGCc -3'
miRNA:   3'- uGCUGCU-------UGGCGcGGCGGAa--GUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 20728 0.77 0.159369
Target:  5'- gAUGACGGcGCgCGCGCUGCCggaCAUCGCc -3'
miRNA:   3'- -UGCUGCU-UG-GCGCGGCGGaa-GUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 8982 0.76 0.163764
Target:  5'- aGCG-CGGGCCGUGCUGCCggugCAgcgCGCg -3'
miRNA:   3'- -UGCuGCUUGGCGCGGCGGaa--GUa--GCG- -5'
17024 3' -56.3 NC_004333.2 + 26446 0.76 0.168267
Target:  5'- uGCGGCGuGCCGaccugGCCGCCUuguggaUCGUCGUg -3'
miRNA:   3'- -UGCUGCuUGGCg----CGGCGGA------AGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 26541 0.76 0.17288
Target:  5'- uGCGGCGAAcugcacggagcCCGCGCCGgUCUUCGUCccuGCg -3'
miRNA:   3'- -UGCUGCUU-----------GGCGCGGC-GGAAGUAG---CG- -5'
17024 3' -56.3 NC_004333.2 + 18172 0.76 0.182447
Target:  5'- cCGACGAGCgGCGCCGCauggugC-UCGCg -3'
miRNA:   3'- uGCUGCUUGgCGCGGCGgaa---GuAGCG- -5'
17024 3' -56.3 NC_004333.2 + 16938 0.75 0.197674
Target:  5'- -aGACGGcGCUGCGCCGCgCggcCGUCGCg -3'
miRNA:   3'- ugCUGCU-UGGCGCGGCG-Gaa-GUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 27977 0.75 0.197674
Target:  5'- aGCG-CGAGCCGCgcccauuacuGCCGCCUUCuugugUGCg -3'
miRNA:   3'- -UGCuGCUUGGCG----------CGGCGGAAGua---GCG- -5'
17024 3' -56.3 NC_004333.2 + 30906 0.75 0.202992
Target:  5'- cGCGuCGAGCgcguCGaCGCuUGCCUUCAUCGCa -3'
miRNA:   3'- -UGCuGCUUG----GC-GCG-GCGGAAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 45127 0.75 0.202992
Target:  5'- cGCGGCG-AUCGCGCCuaCCUgUCGUCGCc -3'
miRNA:   3'- -UGCUGCuUGGCGCGGc-GGA-AGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 7146 0.75 0.213999
Target:  5'- gACGAUcGugCGCGCCGUCUUCAuaUCGa -3'
miRNA:   3'- -UGCUGcUugGCGCGGCGGAAGU--AGCg -5'
17024 3' -56.3 NC_004333.2 + 26910 0.75 0.213999
Target:  5'- aACGGCGGAUUG-GCCGCCUUgCA-CGCg -3'
miRNA:   3'- -UGCUGCUUGGCgCGGCGGAA-GUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.