miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17024 3' -56.3 NC_004333.2 + 23870 0.8 0.09664
Target:  5'- gACGACGAcguucggguUCGUGCCGCCgUUCAUCGUg -3'
miRNA:   3'- -UGCUGCUu--------GGCGCGGCGG-AAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 2621 0.73 0.25661
Target:  5'- cGCGACaGAccgACCGCGCgGU--UCAUCGCg -3'
miRNA:   3'- -UGCUG-CU---UGGCGCGgCGgaAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 20344 0.73 0.276902
Target:  5'- cCGACGGguACCGCGaCCGgCUUCGUgaaCGCc -3'
miRNA:   3'- uGCUGCU--UGGCGC-GGCgGAAGUA---GCG- -5'
17024 3' -56.3 NC_004333.2 + 38236 0.66 0.666336
Target:  5'- --aGCGcGCCGCGCCGUUcgUCAaCGUg -3'
miRNA:   3'- ugcUGCuUGGCGCGGCGGa-AGUaGCG- -5'
17024 3' -56.3 NC_004333.2 + 31143 0.77 0.158936
Target:  5'- cCGGCGAaugcaucGCCGC-CCGCCUuggCAUCGCc -3'
miRNA:   3'- uGCUGCU-------UGGCGcGGCGGAa--GUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 20728 0.77 0.159369
Target:  5'- gAUGACGGcGCgCGCGCUGCCggaCAUCGCc -3'
miRNA:   3'- -UGCUGCU-UG-GCGCGGCGGaa-GUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 26541 0.76 0.17288
Target:  5'- uGCGGCGAAcugcacggagcCCGCGCCGgUCUUCGUCccuGCg -3'
miRNA:   3'- -UGCUGCUU-----------GGCGCGGC-GGAAGUAG---CG- -5'
17024 3' -56.3 NC_004333.2 + 45127 0.75 0.202992
Target:  5'- cGCGGCG-AUCGCGCCuaCCUgUCGUCGCc -3'
miRNA:   3'- -UGCUGCuUGGCGCGGc-GGA-AGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 20537 0.74 0.231467
Target:  5'- cUGGCGGccuguaacaugGCCGCGCCGCUgaUCGUCGg -3'
miRNA:   3'- uGCUGCU-----------UGGCGCGGCGGa-AGUAGCg -5'
17024 3' -56.3 NC_004333.2 + 3381 0.74 0.250121
Target:  5'- aAUGuCGAcCgGCGUCGCCgUCGUCGCg -3'
miRNA:   3'- -UGCuGCUuGgCGCGGCGGaAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 24988 0.74 0.243769
Target:  5'- aACGucuGCGu-CCGCGCCGCCUgUCA-CGCu -3'
miRNA:   3'- -UGC---UGCuuGGCGCGGCGGA-AGUaGCG- -5'
17024 3' -56.3 NC_004333.2 + 26910 0.75 0.213999
Target:  5'- aACGGCGGAUUG-GCCGCCUUgCA-CGCg -3'
miRNA:   3'- -UGCUGCUUGGCgCGGCGGAA-GUaGCG- -5'
17024 3' -56.3 NC_004333.2 + 29039 0.78 0.120971
Target:  5'- aGCG-CGAgcACCGCGCCGCCcaCgAUCGCg -3'
miRNA:   3'- -UGCuGCU--UGGCGCGGCGGaaG-UAGCG- -5'
17024 3' -56.3 NC_004333.2 + 37366 0.74 0.243769
Target:  5'- cGCGACGugcACCGCGUCGCgCggccguccUCAUCGUc -3'
miRNA:   3'- -UGCUGCu--UGGCGCGGCG-Ga-------AGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 8049 0.77 0.138958
Target:  5'- cCGACGAGCuCG-GCgGCCUUCAUCGg -3'
miRNA:   3'- uGCUGCUUG-GCgCGgCGGAAGUAGCg -5'
17024 3' -56.3 NC_004333.2 + 30906 0.75 0.202992
Target:  5'- cGCGuCGAGCgcguCGaCGCuUGCCUUCAUCGCa -3'
miRNA:   3'- -UGCuGCUUG----GC-GCG-GCGGAAGUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 22554 0.74 0.24948
Target:  5'- aGCGACGAGCgCGCGgugaaacCCGCCgUCGUCa- -3'
miRNA:   3'- -UGCUGCUUG-GCGC-------GGCGGaAGUAGcg -5'
17024 3' -56.3 NC_004333.2 + 31368 0.73 0.25661
Target:  5'- aGCGACGcAGCCGCGCguuuCGUC-UCAUCGa -3'
miRNA:   3'- -UGCUGC-UUGGCGCG----GCGGaAGUAGCg -5'
17024 3' -56.3 NC_004333.2 + 30292 0.77 0.142839
Target:  5'- gACGGCGAGCUG-GCCGCC---GUCGCg -3'
miRNA:   3'- -UGCUGCUUGGCgCGGCGGaagUAGCG- -5'
17024 3' -56.3 NC_004333.2 + 26446 0.76 0.168267
Target:  5'- uGCGGCGuGCCGaccugGCCGCCUuguggaUCGUCGUg -3'
miRNA:   3'- -UGCUGCuUGGCg----CGGCGGA------AGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.