miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17024 5' -54.3 NC_004333.2 + 17492 0.66 0.719487
Target:  5'- uUGCcGCcgccGGCGGCGGCGCgaacGGcUUCAu -3'
miRNA:   3'- cACGuUGuu--CCGCUGCCGCG----UC-AAGU- -5'
17024 5' -54.3 NC_004333.2 + 46217 0.66 0.719487
Target:  5'- cUGCAGCAaaucgacaAGGCGGCccgcgucgccGGUGCGGgcCAg -3'
miRNA:   3'- cACGUUGU--------UCCGCUG----------CCGCGUCaaGU- -5'
17024 5' -54.3 NC_004333.2 + 22862 0.66 0.708468
Target:  5'- uUGCGGCccGGCGAuCGGCGCGa---- -3'
miRNA:   3'- cACGUUGuuCCGCU-GCCGCGUcaagu -5'
17024 5' -54.3 NC_004333.2 + 21012 0.66 0.708468
Target:  5'- -gGCAGCcgucacGGGCGACGaaguggccGCGCAGUg-- -3'
miRNA:   3'- caCGUUGu-----UCCGCUGC--------CGCGUCAagu -5'
17024 5' -54.3 NC_004333.2 + 35785 0.66 0.708468
Target:  5'- -gGCGACAcuggcgcgccGGGCGG-GGCGCGGg--- -3'
miRNA:   3'- caCGUUGU----------UCCGCUgCCGCGUCaagu -5'
17024 5' -54.3 NC_004333.2 + 42391 0.66 0.69737
Target:  5'- uUGCGACGGGGCGAauGCGagaGGcuaUCGa -3'
miRNA:   3'- cACGUUGUUCCGCUgcCGCg--UCa--AGU- -5'
17024 5' -54.3 NC_004333.2 + 36675 0.66 0.69737
Target:  5'- -cGCAGCGccucgugaugaAGGCGAaGGUGCAGg--- -3'
miRNA:   3'- caCGUUGU-----------UCCGCUgCCGCGUCaagu -5'
17024 5' -54.3 NC_004333.2 + 29383 0.66 0.69737
Target:  5'- cUGCGGCcgcGCGAUaaGCGCGGUUCAg -3'
miRNA:   3'- cACGUUGuucCGCUGc-CGCGUCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 4647 0.66 0.686206
Target:  5'- -cGCGAuCAuGGCGACGG-GCAGgcCGg -3'
miRNA:   3'- caCGUU-GUuCCGCUGCCgCGUCaaGU- -5'
17024 5' -54.3 NC_004333.2 + 24635 0.66 0.686206
Target:  5'- -cGCGACAGcuacgcagaucGGCGGCuacccgaaaGGCGCGGUgcugCAa -3'
miRNA:   3'- caCGUUGUU-----------CCGCUG---------CCGCGUCAa---GU- -5'
17024 5' -54.3 NC_004333.2 + 21412 0.66 0.673861
Target:  5'- -cGCGGCGccggaauGGGCaaauugGGCGGCGCAGgaCGc -3'
miRNA:   3'- caCGUUGU-------UCCG------CUGCCGCGUCaaGU- -5'
17024 5' -54.3 NC_004333.2 + 8296 0.67 0.663723
Target:  5'- aUGUAGguAGGCGGCG-CGCGGggCu -3'
miRNA:   3'- cACGUUguUCCGCUGCcGCGUCaaGu -5'
17024 5' -54.3 NC_004333.2 + 16873 0.67 0.663723
Target:  5'- cGUGCuc---GGCGuCGGCGCAGgugCGg -3'
miRNA:   3'- -CACGuuguuCCGCuGCCGCGUCaa-GU- -5'
17024 5' -54.3 NC_004333.2 + 25115 0.67 0.663723
Target:  5'- -gGCAcgGCGAGcaCGGCGGCGCGcacGUUCGc -3'
miRNA:   3'- caCGU--UGUUCc-GCUGCCGCGU---CAAGU- -5'
17024 5' -54.3 NC_004333.2 + 36827 0.67 0.662595
Target:  5'- -cGCGGCAAGGUGACGacgaaccGCGCcGccUUCAu -3'
miRNA:   3'- caCGUUGUUCCGCUGC-------CGCGuC--AAGU- -5'
17024 5' -54.3 NC_004333.2 + 13296 0.67 0.65243
Target:  5'- -gGCAACAucgaAGGCaACGGCGgGGgaCAg -3'
miRNA:   3'- caCGUUGU----UCCGcUGCCGCgUCaaGU- -5'
17024 5' -54.3 NC_004333.2 + 16211 0.67 0.65243
Target:  5'- ---gAGCAGGGCGGCuucGGCGU-GUUCAa -3'
miRNA:   3'- cacgUUGUUCCGCUG---CCGCGuCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 18028 0.67 0.641116
Target:  5'- cGUaCAACAcgaaAGGCGGCGGCcaaggcgcGCAGggCAu -3'
miRNA:   3'- -CAcGUUGU----UCCGCUGCCG--------CGUCaaGU- -5'
17024 5' -54.3 NC_004333.2 + 41706 0.67 0.641116
Target:  5'- -gGCAACuucGGGCGgcACGGCGCGa-UCAa -3'
miRNA:   3'- caCGUUGu--UCCGC--UGCCGCGUcaAGU- -5'
17024 5' -54.3 NC_004333.2 + 22172 0.67 0.629794
Target:  5'- uUGUcGCc-GGCGGCGGCcggcgGCGGUUCGg -3'
miRNA:   3'- cACGuUGuuCCGCUGCCG-----CGUCAAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.