miRNA display CGI


Results 1 - 20 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17026 3' -63.9 NC_004333.2 + 1937 0.66 0.289293
Target:  5'- cAGCugGCCcGCaCCGGCGaCgcggGCcgccuuGUCGAUu -3'
miRNA:   3'- -UCGugCGG-CG-GGCCGC-Ga---CG------CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 6350 0.66 0.269014
Target:  5'- cGCuCGCgGCCgGGCGCcgucgUGCcGUCGGg -3'
miRNA:   3'- uCGuGCGgCGGgCCGCG-----ACG-CAGCUg -5'
17026 3' -63.9 NC_004333.2 + 6871 0.66 0.262514
Target:  5'- cGCGCGCCgggcgaGCUCGGC-CU-CGUCGAa -3'
miRNA:   3'- uCGUGCGG------CGGGCCGcGAcGCAGCUg -5'
17026 3' -63.9 NC_004333.2 + 4310 0.66 0.262514
Target:  5'- uGCAgUGCCGCgagcaCCgGGUGCUGCGuuUCGAUu -3'
miRNA:   3'- uCGU-GCGGCG-----GG-CCGCGACGC--AGCUG- -5'
17026 3' -63.9 NC_004333.2 + 39090 0.66 0.261229
Target:  5'- cAGCGCaagccagauuuaCCGCgaGGCGCUcacgcagaucgGCGUCGACg -3'
miRNA:   3'- -UCGUGc-----------GGCGggCCGCGA-----------CGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 38934 0.66 0.256142
Target:  5'- cGCACGCgGCgaGGCGCcccCGUuCGGCg -3'
miRNA:   3'- uCGUGCGgCGggCCGCGac-GCA-GCUG- -5'
17026 3' -63.9 NC_004333.2 + 47363 0.66 0.256142
Target:  5'- aAGUGCaGCUGUUCGGUcCUGCGcCGGCg -3'
miRNA:   3'- -UCGUG-CGGCGGGCCGcGACGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 29707 0.66 0.256142
Target:  5'- gGGUACGCC-UCCGGUGCcggguUGCG-CGAa -3'
miRNA:   3'- -UCGUGCGGcGGGCCGCG-----ACGCaGCUg -5'
17026 3' -63.9 NC_004333.2 + 27303 0.66 0.256142
Target:  5'- gGGCucguCGCCGCCCauaccuuguGGCGUucgagcaggaUGCG-CGGCc -3'
miRNA:   3'- -UCGu---GCGGCGGG---------CCGCG----------ACGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 44445 0.66 0.269014
Target:  5'- uGCAUugauCCGCCCGGgGgUGCG-CGAg -3'
miRNA:   3'- uCGUGc---GGCGGGCCgCgACGCaGCUg -5'
17026 3' -63.9 NC_004333.2 + 2792 0.66 0.269014
Target:  5'- cGGCcuUGCCGaCCUGGCGCUG-GUCu-- -3'
miRNA:   3'- -UCGu-GCGGC-GGGCCGCGACgCAGcug -5'
17026 3' -63.9 NC_004333.2 + 17091 0.66 0.269014
Target:  5'- gGGCcagGCGCCGaaCCUgcaGGCGCUcGCGUCGu- -3'
miRNA:   3'- -UCG---UGCGGC--GGG---CCGCGA-CGCAGCug -5'
17026 3' -63.9 NC_004333.2 + 1491 0.66 0.289293
Target:  5'- uAGCGCGCCGCCaguuCGGUaUUG-GUCGGu -3'
miRNA:   3'- -UCGUGCGGCGG----GCCGcGACgCAGCUg -5'
17026 3' -63.9 NC_004333.2 + 10765 0.66 0.289293
Target:  5'- uGCACGCCGCgCaaacCGCgaGCGcCGACg -3'
miRNA:   3'- uCGUGCGGCGgGcc--GCGa-CGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 22772 0.66 0.281041
Target:  5'- cGGCACGCUGCa-GGCGCgcucgccggaugGC-UCGAUg -3'
miRNA:   3'- -UCGUGCGGCGggCCGCGa-----------CGcAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 16038 0.66 0.275644
Target:  5'- cAGU-CGCCGCguucgacgugCUGGCGCUuaucGCGUCGGa -3'
miRNA:   3'- -UCGuGCGGCG----------GGCCGCGA----CGCAGCUg -5'
17026 3' -63.9 NC_004333.2 + 10964 0.66 0.274975
Target:  5'- gGGCcacaGCGUCGCgcggaacucggcaCCGGCGC-GCGUCGugaGCg -3'
miRNA:   3'- -UCG----UGCGGCG-------------GGCCGCGaCGCAGC---UG- -5'
17026 3' -63.9 NC_004333.2 + 29650 0.66 0.274975
Target:  5'- cGGguUGCCGCCggcugcgaaGGcCGCUGCagcguccGUCGGCg -3'
miRNA:   3'- -UCguGCGGCGGg--------CC-GCGACG-------CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 22110 0.66 0.273641
Target:  5'- aAGCGcCGCCGCUgCGGCGCcacugGCaaauccggcgcaccGUCGAUu -3'
miRNA:   3'- -UCGU-GCGGCGG-GCCGCGa----CG--------------CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 33345 0.66 0.273641
Target:  5'- cGGCACGCCGuggucugcgaaugaCCUGcucGCGC-GCGUgCGGCg -3'
miRNA:   3'- -UCGUGCGGC--------------GGGC---CGCGaCGCA-GCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.