miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17026 3' -63.9 NC_004333.2 + 36475 1.09 0.000125
Target:  5'- cAGCACGCCGCCCGGCGCUGCGUCGACg -3'
miRNA:   3'- -UCGUGCGGCGGGCCGCGACGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 1275 0.85 0.010295
Target:  5'- uGGCGCGCCGCCUGGCGC-GCGUUG-Cg -3'
miRNA:   3'- -UCGUGCGGCGGGCCGCGaCGCAGCuG- -5'
17026 3' -63.9 NC_004333.2 + 28244 0.84 0.012568
Target:  5'- cGGCuCGCCGCCCGGCGCgcucGuCGUCGAUg -3'
miRNA:   3'- -UCGuGCGGCGGGCCGCGa---C-GCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 39163 0.8 0.024154
Target:  5'- gAGCGCGCCGCCUGGCaagccgcgaacGCcGCGUCGGu -3'
miRNA:   3'- -UCGUGCGGCGGGCCG-----------CGaCGCAGCUg -5'
17026 3' -63.9 NC_004333.2 + 6603 0.79 0.028621
Target:  5'- cGGCGCGCCGCCCaGCGCcGCaGUCG-Ca -3'
miRNA:   3'- -UCGUGCGGCGGGcCGCGaCG-CAGCuG- -5'
17026 3' -63.9 NC_004333.2 + 12388 0.78 0.035862
Target:  5'- cGCGCcCCGCCCGGCGCgccaGUGUCGcCg -3'
miRNA:   3'- uCGUGcGGCGGGCCGCGa---CGCAGCuG- -5'
17026 3' -63.9 NC_004333.2 + 47945 0.77 0.037937
Target:  5'- cGGCAaGCUGCUCGGCGCgcugGuCGUCGGCg -3'
miRNA:   3'- -UCGUgCGGCGGGCCGCGa---C-GCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 13871 0.77 0.044145
Target:  5'- gAGCGCGCCGCgccgcgcgaagucggCCGGCacggGCUGCG-CGGCg -3'
miRNA:   3'- -UCGUGCGGCG---------------GGCCG----CGACGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 8513 0.76 0.04965
Target:  5'- aAGCGCGCCGCCuCGGCGaccgugaaguucGCGUcCGGCa -3'
miRNA:   3'- -UCGUGCGGCGG-GCCGCga----------CGCA-GCUG- -5'
17026 3' -63.9 NC_004333.2 + 8649 0.75 0.061015
Target:  5'- cGGCGCGgCGCCCGGCuugcucgugacGgUGCcGUCGGCg -3'
miRNA:   3'- -UCGUGCgGCGGGCCG-----------CgACG-CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 17288 0.75 0.061015
Target:  5'- cGUgaACGCCGgCCGGCGCaGCGuccUCGACa -3'
miRNA:   3'- uCG--UGCGGCgGGCCGCGaCGC---AGCUG- -5'
17026 3' -63.9 NC_004333.2 + 39068 0.75 0.062732
Target:  5'- gAGUACGCgCGaCUCGuGCGCcgUGCGUCGGCa -3'
miRNA:   3'- -UCGUGCG-GC-GGGC-CGCG--ACGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 3185 0.74 0.068168
Target:  5'- cAGCGCGCCGUgguagaucguaUGGUGCUGCaGUCGGCc -3'
miRNA:   3'- -UCGUGCGGCGg----------GCCGCGACG-CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 710 0.74 0.070078
Target:  5'- cGGCAguCGCCG-CCGGCGCguugcuagucgaUGCGUCGAa -3'
miRNA:   3'- -UCGU--GCGGCgGGCCGCG------------ACGCAGCUg -5'
17026 3' -63.9 NC_004333.2 + 32533 0.74 0.070078
Target:  5'- uGCcgACGUCGCgCGGCGCgcucGCGUCGAUc -3'
miRNA:   3'- uCG--UGCGGCGgGCCGCGa---CGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 45711 0.74 0.076125
Target:  5'- cGCACGCCugcaucucgaGCCCGGCGCgaacGUGcCGAUc -3'
miRNA:   3'- uCGUGCGG----------CGGGCCGCGa---CGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 18177 0.73 0.078249
Target:  5'- gAGCgGCGCCGCauGGUGCUcGCGcUCGGCg -3'
miRNA:   3'- -UCG-UGCGGCGggCCGCGA-CGC-AGCUG- -5'
17026 3' -63.9 NC_004333.2 + 24287 0.73 0.08043
Target:  5'- ---uUGUCGCCCGGCGaCUGCG-CGACc -3'
miRNA:   3'- ucguGCGGCGGGCCGC-GACGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 45006 0.73 0.082669
Target:  5'- cGGCGCGCUGUCCGGCcGCUcgaccGCGcgUGGCg -3'
miRNA:   3'- -UCGUGCGGCGGGCCG-CGA-----CGCa-GCUG- -5'
17026 3' -63.9 NC_004333.2 + 35897 0.73 0.082669
Target:  5'- uGCGCGCCG-CCGGUGCcgUGUacguuGUCGACg -3'
miRNA:   3'- uCGUGCGGCgGGCCGCG--ACG-----CAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.