miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17026 3' -63.9 NC_004333.2 + 76 0.71 0.124212
Target:  5'- cGGUGCGCgCGCCCGGUugccGcCUGCGccucgUCGGCa -3'
miRNA:   3'- -UCGUGCG-GCGGGCCG----C-GACGC-----AGCUG- -5'
17026 3' -63.9 NC_004333.2 + 473 0.66 0.275644
Target:  5'- uGC-CGCCGCCC-GCGau-UGUCGGCa -3'
miRNA:   3'- uCGuGCGGCGGGcCGCgacGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 707 0.67 0.237785
Target:  5'- uGC-CGCCGCCCGcgaGCGCcGUGgCGAg -3'
miRNA:   3'- uCGuGCGGCGGGC---CGCGaCGCaGCUg -5'
17026 3' -63.9 NC_004333.2 + 710 0.74 0.070078
Target:  5'- cGGCAguCGCCG-CCGGCGCguugcuagucgaUGCGUCGAa -3'
miRNA:   3'- -UCGU--GCGGCgGGCCGCG------------ACGCAGCUg -5'
17026 3' -63.9 NC_004333.2 + 969 0.71 0.114281
Target:  5'- uAGCGCGcCCGUCgCGGCgacuugugccucuGCUGCG-CGGCa -3'
miRNA:   3'- -UCGUGC-GGCGG-GCCG-------------CGACGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 1234 0.72 0.105667
Target:  5'- cGCGCGCCGCCUuG-GCUGCGcgCGAg -3'
miRNA:   3'- uCGUGCGGCGGGcCgCGACGCa-GCUg -5'
17026 3' -63.9 NC_004333.2 + 1275 0.85 0.010295
Target:  5'- uGGCGCGCCGCCUGGCGC-GCGUUG-Cg -3'
miRNA:   3'- -UCGUGCGGCGGGCCGCGaCGCAGCuG- -5'
17026 3' -63.9 NC_004333.2 + 1491 0.66 0.289293
Target:  5'- uAGCGCGCCGCCaguuCGGUaUUG-GUCGGu -3'
miRNA:   3'- -UCGUGCGGCGG----GCCGcGACgCAGCUg -5'
17026 3' -63.9 NC_004333.2 + 1937 0.66 0.289293
Target:  5'- cAGCugGCCcGCaCCGGCGaCgcggGCcgccuuGUCGAUu -3'
miRNA:   3'- -UCGugCGG-CG-GGCCGC-Ga---CG------CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 2792 0.66 0.269014
Target:  5'- cGGCcuUGCCGaCCUGGCGCUG-GUCu-- -3'
miRNA:   3'- -UCGu-GCGGC-GGGCCGCGACgCAGcug -5'
17026 3' -63.9 NC_004333.2 + 3051 0.7 0.134579
Target:  5'- cAGCugGCCgccguugacgauGCCCGGaaaGUaaGCGUCGGCg -3'
miRNA:   3'- -UCGugCGG------------CGGGCCg--CGa-CGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 3147 0.69 0.161926
Target:  5'- uGCGCGCCGCCa-GCGCcacgcGCgGUCGAg -3'
miRNA:   3'- uCGUGCGGCGGgcCGCGa----CG-CAGCUg -5'
17026 3' -63.9 NC_004333.2 + 3185 0.74 0.068168
Target:  5'- cAGCGCGCCGUgguagaucguaUGGUGCUGCaGUCGGCc -3'
miRNA:   3'- -UCGUGCGGCGg----------GCCGCGACG-CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 3216 0.67 0.228452
Target:  5'- cGGCGCGCCGCCCgccccgaugacgccgGGCagcauCUGCacgaucugGUCGAUc -3'
miRNA:   3'- -UCGUGCGGCGGG---------------CCGc----GACG--------CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 4168 0.72 0.100086
Target:  5'- cAGCGCGCCGCgCUcGUGCUGCaG-CGGCg -3'
miRNA:   3'- -UCGUGCGGCG-GGcCGCGACG-CaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 4310 0.66 0.262514
Target:  5'- uGCAgUGCCGCgagcaCCgGGUGCUGCGuuUCGAUu -3'
miRNA:   3'- uCGU-GCGGCG-----GG-CCGCGACGC--AGCUG- -5'
17026 3' -63.9 NC_004333.2 + 4819 0.7 0.141927
Target:  5'- -aUACGCCGCCCGGaauCUGgauaGUCGGCu -3'
miRNA:   3'- ucGUGCGGCGGGCCgc-GACg---CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 5175 0.72 0.102841
Target:  5'- cAGCuuGCGCCugauugaacaucGCCUgcaGGCGCgGCGUCGGCa -3'
miRNA:   3'- -UCG--UGCGG------------CGGG---CCGCGaCGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 6350 0.66 0.269014
Target:  5'- cGCuCGCgGCCgGGCGCcgucgUGCcGUCGGg -3'
miRNA:   3'- uCGuGCGgCGGgCCGCG-----ACG-CAGCUg -5'
17026 3' -63.9 NC_004333.2 + 6472 0.67 0.220542
Target:  5'- cGCGCcguGCCGCCCGaaguugcCGCccGCGUCGAg -3'
miRNA:   3'- uCGUG---CGGCGGGCc------GCGa-CGCAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.