miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17026 3' -63.9 NC_004333.2 + 1275 0.85 0.010295
Target:  5'- uGGCGCGCCGCCUGGCGC-GCGUUG-Cg -3'
miRNA:   3'- -UCGUGCGGCGGGCCGCGaCGCAGCuG- -5'
17026 3' -63.9 NC_004333.2 + 26714 0.71 0.115831
Target:  5'- uGCcCGCCGCgCCGGC-CaggaacuugacccauUGCGUCGGCg -3'
miRNA:   3'- uCGuGCGGCG-GGCCGcG---------------ACGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 18503 0.7 0.131038
Target:  5'- cGGCACGCCGa-CGGaCGCUGCaG-CGGCc -3'
miRNA:   3'- -UCGUGCGGCggGCC-GCGACG-CaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 1937 0.66 0.289293
Target:  5'- cAGCugGCCcGCaCCGGCGaCgcggGCcgccuuGUCGAUu -3'
miRNA:   3'- -UCGugCGG-CG-GGCCGC-Ga---CG------CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 13871 0.77 0.044145
Target:  5'- gAGCGCGCCGCgccgcgcgaagucggCCGGCacggGCUGCG-CGGCg -3'
miRNA:   3'- -UCGUGCGGCG---------------GGCCG----CGACGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 8649 0.75 0.061015
Target:  5'- cGGCGCGgCGCCCGGCuugcucgugacGgUGCcGUCGGCg -3'
miRNA:   3'- -UCGUGCgGCGGGCCG-----------CgACG-CAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 39068 0.75 0.062732
Target:  5'- gAGUACGCgCGaCUCGuGCGCcgUGCGUCGGCa -3'
miRNA:   3'- -UCGUGCG-GC-GGGC-CGCG--ACGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 32533 0.74 0.070078
Target:  5'- uGCcgACGUCGCgCGGCGCgcucGCGUCGAUc -3'
miRNA:   3'- uCG--UGCGGCGgGCCGCGa---CGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 45006 0.73 0.082669
Target:  5'- cGGCGCGCUGUCCGGCcGCUcgaccGCGcgUGGCg -3'
miRNA:   3'- -UCGUGCGGCGGGCCG-CGA-----CGCa-GCUG- -5'
17026 3' -63.9 NC_004333.2 + 31168 0.71 0.11459
Target:  5'- uGGCAuCGCCGCCCagacGGCGC-GCcguacUCGACa -3'
miRNA:   3'- -UCGU-GCGGCGGG----CCGCGaCGc----AGCUG- -5'
17026 3' -63.9 NC_004333.2 + 5175 0.72 0.102841
Target:  5'- cAGCuuGCGCCugauugaacaucGCCUgcaGGCGCgGCGUCGGCa -3'
miRNA:   3'- -UCG--UGCGG------------CGGG---CCGCGaCGCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 24287 0.73 0.08043
Target:  5'- ---uUGUCGCCCGGCGaCUGCG-CGACc -3'
miRNA:   3'- ucguGCGGCGGGCCGC-GACGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 6603 0.79 0.028621
Target:  5'- cGGCGCGCCGCCCaGCGCcGCaGUCG-Ca -3'
miRNA:   3'- -UCGUGCGGCGGGcCGCGaCG-CAGCuG- -5'
17026 3' -63.9 NC_004333.2 + 27851 0.72 0.105667
Target:  5'- cAGCACGUCGCugagcuucaCCGGCcCUGCGUuCGAg -3'
miRNA:   3'- -UCGUGCGGCG---------GGCCGcGACGCA-GCUg -5'
17026 3' -63.9 NC_004333.2 + 12388 0.78 0.035862
Target:  5'- cGCGCcCCGCCCGGCGCgccaGUGUCGcCg -3'
miRNA:   3'- uCGUGcGGCGGGCCGCGa---CGCAGCuG- -5'
17026 3' -63.9 NC_004333.2 + 45711 0.74 0.076125
Target:  5'- cGCACGCCugcaucucgaGCCCGGCGCgaacGUGcCGAUc -3'
miRNA:   3'- uCGUGCGG----------CGGGCCGCGa---CGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 26801 0.71 0.108566
Target:  5'- aGGCGCGCUucguugccgacgGCCCGGCcuGCaGCGUCGuaGCg -3'
miRNA:   3'- -UCGUGCGG------------CGGGCCG--CGaCGCAGC--UG- -5'
17026 3' -63.9 NC_004333.2 + 46943 0.71 0.117717
Target:  5'- cGCGCGCaGCCaaggCGGCGC-GCGcCGACg -3'
miRNA:   3'- uCGUGCGgCGG----GCCGCGaCGCaGCUG- -5'
17026 3' -63.9 NC_004333.2 + 47945 0.77 0.037937
Target:  5'- cGGCAaGCUGCUCGGCGCgcugGuCGUCGGCg -3'
miRNA:   3'- -UCGUgCGGCGGGCCGCGa---C-GCAGCUG- -5'
17026 3' -63.9 NC_004333.2 + 17288 0.75 0.061015
Target:  5'- cGUgaACGCCGgCCGGCGCaGCGuccUCGACa -3'
miRNA:   3'- uCG--UGCGGCgGGCCGCGaCGC---AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.