miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17027 3' -60.2 NC_004333.2 + 9514 0.66 0.452615
Target:  5'- cUGCUCGacgaaguacgacuUGCCCGUgccgcccgGGCCGAUCa -3'
miRNA:   3'- cACGAGC-------------GCGGGCAaag-----CCGGCUGGc -5'
17027 3' -60.2 NC_004333.2 + 10492 0.66 0.444024
Target:  5'- -cGCcaCGCGCCgGgc-CGGCCGACg- -3'
miRNA:   3'- caCGa-GCGCGGgCaaaGCCGGCUGgc -5'
17027 3' -60.2 NC_004333.2 + 40414 0.66 0.444024
Target:  5'- -gGCUCGUacuuGUUCGgcgUGGCCGGCCu -3'
miRNA:   3'- caCGAGCG----CGGGCaaaGCCGGCUGGc -5'
17027 3' -60.2 NC_004333.2 + 38697 0.66 0.444024
Target:  5'- -aGCUCGagcaGCUCGg--CGGCgGugCGg -3'
miRNA:   3'- caCGAGCg---CGGGCaaaGCCGgCugGC- -5'
17027 3' -60.2 NC_004333.2 + 33370 0.66 0.434587
Target:  5'- cUGCUCGCGCgCGUgcggCgaaagauggaaGGCCaACCGa -3'
miRNA:   3'- cACGAGCGCGgGCAaa--G-----------CCGGcUGGC- -5'
17027 3' -60.2 NC_004333.2 + 37851 0.66 0.434587
Target:  5'- -cGCgaUCGCGUCCGgacUCGaGCCcgaGGCCGg -3'
miRNA:   3'- caCG--AGCGCGGGCaa-AGC-CGG---CUGGC- -5'
17027 3' -60.2 NC_004333.2 + 9262 0.66 0.425267
Target:  5'- -cGuCUCGUGCuuGU--UGGCCGuGCCGa -3'
miRNA:   3'- caC-GAGCGCGggCAaaGCCGGC-UGGC- -5'
17027 3' -60.2 NC_004333.2 + 43301 0.66 0.425267
Target:  5'- -gGCUaUGCGCUCGUgccgaUCGaGCCGacGCCGg -3'
miRNA:   3'- caCGA-GCGCGGGCAa----AGC-CGGC--UGGC- -5'
17027 3' -60.2 NC_004333.2 + 20531 0.66 0.416067
Target:  5'- -cGCUCGCuggcgGCCUGUaacaUGGCCGcGCCGc -3'
miRNA:   3'- caCGAGCG-----CGGGCAaa--GCCGGC-UGGC- -5'
17027 3' -60.2 NC_004333.2 + 16870 0.66 0.406089
Target:  5'- -cGC-CGUGCUCGgcgUCGGCgcaggugCGGCCGg -3'
miRNA:   3'- caCGaGCGCGGGCaa-AGCCG-------GCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 24090 0.67 0.398039
Target:  5'- -cGCUCauGCGCUCGaugUUCGG-CGAUCGg -3'
miRNA:   3'- caCGAG--CGCGGGCa--AAGCCgGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 22605 0.67 0.398039
Target:  5'- uUGUUCGCGUCCGUcggguucgUCGcGCCuGugCGc -3'
miRNA:   3'- cACGAGCGCGGGCAa-------AGC-CGG-CugGC- -5'
17027 3' -60.2 NC_004333.2 + 6350 0.67 0.380519
Target:  5'- -cGCUCGCGgCCGggcgccgUCGuGCCgucgggcagcuuGACCGg -3'
miRNA:   3'- caCGAGCGCgGGCaa-----AGC-CGG------------CUGGC- -5'
17027 3' -60.2 NC_004333.2 + 19411 0.67 0.380519
Target:  5'- -cGC-CGCGaCCCGcg-CGGUCGACgCGg -3'
miRNA:   3'- caCGaGCGC-GGGCaaaGCCGGCUG-GC- -5'
17027 3' -60.2 NC_004333.2 + 3125 0.67 0.371954
Target:  5'- aGUuCUCGaCGUCCGUUuccuggaagaagUCGGCCagcuGACCGg -3'
miRNA:   3'- -CAcGAGC-GCGGGCAA------------AGCCGG----CUGGC- -5'
17027 3' -60.2 NC_004333.2 + 45071 0.67 0.370257
Target:  5'- -gGC-CGCGCCCGggcaagaaaaCGGCgGACUGc -3'
miRNA:   3'- caCGaGCGCGGGCaaa-------GCCGgCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 11041 0.67 0.363522
Target:  5'- -cGCcaagCGCGCCCGggUCGaauucUCGACCGc -3'
miRNA:   3'- caCGa---GCGCGGGCaaAGCc----GGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 23434 0.67 0.355223
Target:  5'- -cGC-CGCGUUCGUgagCGGCuucuCGACCGa -3'
miRNA:   3'- caCGaGCGCGGGCAaa-GCCG----GCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 36558 0.67 0.355223
Target:  5'- -cGUUCGCGCgCGaagugaCGGCCGGCgCGu -3'
miRNA:   3'- caCGAGCGCGgGCaaa---GCCGGCUG-GC- -5'
17027 3' -60.2 NC_004333.2 + 39799 0.68 0.347059
Target:  5'- -cGCUCGCGCUg----UGGCCGuCCGa -3'
miRNA:   3'- caCGAGCGCGGgcaaaGCCGGCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.