miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 44448 0.66 0.687823
Target:  5'- aUUGAU--CCGCC-CGggGGUGCGcgaGGCg -3'
miRNA:   3'- -AGCUAgcGGCGGuGCuuUCGCGC---UCG- -5'
17040 3' -55.9 NC_004333.2 + 39515 0.66 0.687823
Target:  5'- cCGAcggCaCCGUCACGAgcAAGC-CGGGCg -3'
miRNA:   3'- aGCUa--GcGGCGGUGCU--UUCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 10431 0.66 0.687823
Target:  5'- aCGAcgcUCGUCGaucuCGCGcAGGCGCG-GCa -3'
miRNA:   3'- aGCU---AGCGGCg---GUGCuUUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 3216 0.66 0.687823
Target:  5'- --aGUCgGCCGCCgACGu--GCGCGcGCa -3'
miRNA:   3'- agcUAG-CGGCGG-UGCuuuCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 44003 0.66 0.687823
Target:  5'- ----aCGCCGCUGCagcacGAGCGCGGcGCg -3'
miRNA:   3'- agcuaGCGGCGGUGcu---UUCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 39156 0.66 0.686737
Target:  5'- cCGAUCucgacgacauccuGCCGCC-CGugcuGCGCGcGCu -3'
miRNA:   3'- aGCUAG-------------CGGCGGuGCuuu-CGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 38828 0.66 0.684564
Target:  5'- cCGA-CGCCGCgcgccgacgacgagCAUGAAAGUGCcgaagacaacGAGCu -3'
miRNA:   3'- aGCUaGCGGCG--------------GUGCUUUCGCG----------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 7477 0.66 0.684564
Target:  5'- aCGAUCGCgGCgAuCGGGuugguguucuuugcGGuCGCGAGUg -3'
miRNA:   3'- aGCUAGCGgCGgU-GCUU--------------UC-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 47613 0.66 0.676942
Target:  5'- gCGcGUCGCCGagaugggcggCACGuucgauccGCGCGAGCa -3'
miRNA:   3'- aGC-UAGCGGCg---------GUGCuuu-----CGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 28979 0.66 0.676942
Target:  5'- gCGAUCaguugcgcgGCCGCCGgGucGGCGUGcGCn -3'
miRNA:   3'- aGCUAG---------CGGCGGUgCuuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 46941 0.66 0.676942
Target:  5'- cUCGcgCGCaGCCAaGgcGGCGCGcGCc -3'
miRNA:   3'- -AGCuaGCGgCGGUgCuuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 7368 0.66 0.676942
Target:  5'- cUUGAUCaGCU-CCAuCGAcGGgGCGAGCg -3'
miRNA:   3'- -AGCUAG-CGGcGGU-GCUuUCgCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 41857 0.66 0.676942
Target:  5'- gCGGUCGUCcUCACGGcuGCGC-AGCc -3'
miRNA:   3'- aGCUAGCGGcGGUGCUuuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 29273 0.66 0.676942
Target:  5'- cUCGAUCGCCacaaacaggcgGCCuuCGAu-GCGUucuGGGCg -3'
miRNA:   3'- -AGCUAGCGG-----------CGGu-GCUuuCGCG---CUCG- -5'
17040 3' -55.9 NC_004333.2 + 30542 0.66 0.676942
Target:  5'- gCGAacgUGUCgGCCACGGcaccGGGCGCGgccGGCg -3'
miRNA:   3'- aGCUa--GCGG-CGGUGCU----UUCGCGC---UCG- -5'
17040 3' -55.9 NC_004333.2 + 39993 0.66 0.676942
Target:  5'- cUCGA-CGCCGCUcacugaguacGCGAuGGaCGCG-GCc -3'
miRNA:   3'- -AGCUaGCGGCGG----------UGCUuUC-GCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 43538 0.66 0.676942
Target:  5'- ----cCGUCGCCAUGAucGCGauGGCg -3'
miRNA:   3'- agcuaGCGGCGGUGCUuuCGCgcUCG- -5'
17040 3' -55.9 NC_004333.2 + 8857 0.66 0.675852
Target:  5'- -aGcgCGCCGCCGcCGAGcgaaucggcugccAGCcccggGUGAGCa -3'
miRNA:   3'- agCuaGCGGCGGU-GCUU-------------UCG-----CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 34268 0.66 0.670393
Target:  5'- aCGAUCgccacggcaGCCGCCGCGcagcccgugccggccGAcuucgcgcGGCGCGGcGCg -3'
miRNA:   3'- aGCUAG---------CGGCGGUGC---------------UU--------UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 45165 0.66 0.666019
Target:  5'- uUCGcgCGCuacguCGCgGCGGAcGCGCcGGCg -3'
miRNA:   3'- -AGCuaGCG-----GCGgUGCUUuCGCGcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.