miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17058 3' -46.9 NC_004333.2 + 13015 0.66 0.987545
Target:  5'- cUGCcgGCGAUGGcGGUGCGauguuuuaccggccuUCAaACGCg -3'
miRNA:   3'- -AUGuaUGCUACCuUCGUGU---------------AGU-UGCG- -5'
17058 3' -46.9 NC_004333.2 + 39736 0.66 0.986823
Target:  5'- gACG--UGGUGGccGGGCAgAUCAACGUc -3'
miRNA:   3'- aUGUauGCUACC--UUCGUgUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 40752 0.66 0.986823
Target:  5'- ----cGCGAUGcugaucGAGCGCAUC-GCGCa -3'
miRNA:   3'- auguaUGCUACc-----UUCGUGUAGuUGCG- -5'
17058 3' -46.9 NC_004333.2 + 19487 0.66 0.986823
Target:  5'- -cUAUGCGAUcGGcgcuGGCGCGcuggCGGCGCu -3'
miRNA:   3'- auGUAUGCUA-CCu---UCGUGUa---GUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 27877 0.66 0.986823
Target:  5'- cUGCGUuCGAguacGGcGGCAucacuucggcCAUCAGCGCg -3'
miRNA:   3'- -AUGUAuGCUa---CCuUCGU----------GUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 44697 0.66 0.984877
Target:  5'- cACAgGCGAUGGAGGacuugaagGCGUUcgccgaGGCGCa -3'
miRNA:   3'- aUGUaUGCUACCUUCg-------UGUAG------UUGCG- -5'
17058 3' -46.9 NC_004333.2 + 14848 0.66 0.984877
Target:  5'- gGCGUGcCGAUcagaaugacgccGGAgagcugcugcaGGCGCGUCAGCaGCa -3'
miRNA:   3'- aUGUAU-GCUA------------CCU-----------UCGUGUAGUUG-CG- -5'
17058 3' -46.9 NC_004333.2 + 7272 0.66 0.984877
Target:  5'- gUGCAUGCGAUcuuucauGCGCAagcCGGCGCa -3'
miRNA:   3'- -AUGUAUGCUAccuu---CGUGUa--GUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 43261 0.66 0.98272
Target:  5'- cGCGauguuUugGAUGGcgacGGCGCAcuaucgCAGCGCg -3'
miRNA:   3'- aUGU-----AugCUACCu---UCGUGUa-----GUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 36412 0.66 0.98272
Target:  5'- aUGCGUGCGAgUGuAAcGCAauCGUCAAUGCa -3'
miRNA:   3'- -AUGUAUGCU-ACcUU-CGU--GUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 19550 0.66 0.98034
Target:  5'- gAUggGCGccGGucGCACGgUCGGCGCg -3'
miRNA:   3'- aUGuaUGCuaCCuuCGUGU-AGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 21205 0.66 0.977722
Target:  5'- uUACGUGCGcaucaAUGGGcGGC-CGUCGcGCGCa -3'
miRNA:   3'- -AUGUAUGC-----UACCU-UCGuGUAGU-UGCG- -5'
17058 3' -46.9 NC_004333.2 + 27503 0.66 0.977722
Target:  5'- uUGCGUGCGGUuGAuguaAGCG-AUCGACGUg -3'
miRNA:   3'- -AUGUAUGCUAcCU----UCGUgUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 42594 0.66 0.977722
Target:  5'- cGCAUGCccGAUGGccGCACAaUCGA-GCu -3'
miRNA:   3'- aUGUAUG--CUACCuuCGUGU-AGUUgCG- -5'
17058 3' -46.9 NC_004333.2 + 15501 0.67 0.974856
Target:  5'- cUGCucgcgGCGGUcaccGGcGGCGCGUCAaGCGCg -3'
miRNA:   3'- -AUGua---UGCUA----CCuUCGUGUAGU-UGCG- -5'
17058 3' -46.9 NC_004333.2 + 41427 0.67 0.974856
Target:  5'- gGCGcGCGAccGggGCGCcgUGGCGCu -3'
miRNA:   3'- aUGUaUGCUacCuuCGUGuaGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 47978 0.67 0.971731
Target:  5'- cAUcgGCGGUGuGcGGCugugcuACAUCGGCGCg -3'
miRNA:   3'- aUGuaUGCUAC-CuUCG------UGUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 16050 0.67 0.971731
Target:  5'- aUGCAUGCGAgUGuAAcGCAauCGUCAAUGCa -3'
miRNA:   3'- -AUGUAUGCU-ACcUU-CGU--GUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 46501 0.68 0.956873
Target:  5'- gUACugcACGAcGGAAGCGCuguuuccgaccgcgCAGCGCa -3'
miRNA:   3'- -AUGua-UGCUaCCUUCGUGua------------GUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 41781 0.68 0.956433
Target:  5'- cGCAUGCGcGUGGGAuucuGUACucccguUCGAUGCg -3'
miRNA:   3'- aUGUAUGC-UACCUU----CGUGu-----AGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.