miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17060 3' -50.9 NC_004333.2 + 46161 0.66 0.877064
Target:  5'- aUGCGGcCGugACGUCGGgcaucauccgCGCcgGCg -3'
miRNA:   3'- aACGCUaGCugUGCAGCUa---------GCGaaUG- -5'
17060 3' -50.9 NC_004333.2 + 44914 0.71 0.639333
Target:  5'- cUGCGucUCGAUGCGUCGcgCGCg--- -3'
miRNA:   3'- aACGCu-AGCUGUGCAGCuaGCGaaug -5'
17060 3' -50.9 NC_004333.2 + 43322 0.69 0.730243
Target:  5'- -aGCGGcaUCGGCACGgCGcgCGCgUACg -3'
miRNA:   3'- aaCGCU--AGCUGUGCaGCuaGCGaAUG- -5'
17060 3' -50.9 NC_004333.2 + 41408 0.68 0.783981
Target:  5'- aUGCGAUCGGCuACcUCGAggCGCgcgACc -3'
miRNA:   3'- aACGCUAGCUG-UGcAGCUa-GCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 40940 0.67 0.823942
Target:  5'- -cGCGA-CGcCACaGUCGGUCGCacgGCa -3'
miRNA:   3'- aaCGCUaGCuGUG-CAGCUAGCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 39183 0.72 0.55913
Target:  5'- -cGCGAaCGcCGCGUCGGUCGCc--- -3'
miRNA:   3'- aaCGCUaGCuGUGCAGCUAGCGaaug -5'
17060 3' -50.9 NC_004333.2 + 38988 0.7 0.673813
Target:  5'- -cGCGAUCGACACuGcCG-UCGCgaACg -3'
miRNA:   3'- aaCGCUAGCUGUG-CaGCuAGCGaaUG- -5'
17060 3' -50.9 NC_004333.2 + 36198 0.66 0.884996
Target:  5'- -cGCGAUaCGGC-CG-CGAUCGUcgACg -3'
miRNA:   3'- aaCGCUA-GCUGuGCaGCUAGCGaaUG- -5'
17060 3' -50.9 NC_004333.2 + 35517 0.72 0.547853
Target:  5'- -cGCGGUCGACcCGUCGAUCa----- -3'
miRNA:   3'- aaCGCUAGCUGuGCAGCUAGcgaaug -5'
17060 3' -50.9 NC_004333.2 + 34080 0.66 0.900004
Target:  5'- -aGCGucgaCGGCAUGaCGAUCGCgcUGCa -3'
miRNA:   3'- aaCGCua--GCUGUGCaGCUAGCGa-AUG- -5'
17060 3' -50.9 NC_004333.2 + 33020 0.73 0.525525
Target:  5'- -cGgGAUCG--GCGUCGAUCGCUUugaGCg -3'
miRNA:   3'- aaCgCUAGCugUGCAGCUAGCGAA---UG- -5'
17060 3' -50.9 NC_004333.2 + 32367 0.68 0.773527
Target:  5'- gUGCGcaggcGUCGGCGCGaUCGAaCGCUUc- -3'
miRNA:   3'- aACGC-----UAGCUGUGC-AGCUaGCGAAug -5'
17060 3' -50.9 NC_004333.2 + 32155 0.66 0.900004
Target:  5'- -gGCGAcugUCGGCAgGcCGGccacgCGCUUACu -3'
miRNA:   3'- aaCGCU---AGCUGUgCaGCUa----GCGAAUG- -5'
17060 3' -50.9 NC_004333.2 + 31468 0.67 0.842644
Target:  5'- -cGCGaAUCuGCuuGUCGAUCGCUUu- -3'
miRNA:   3'- aaCGC-UAGcUGugCAGCUAGCGAAug -5'
17060 3' -50.9 NC_004333.2 + 30906 0.76 0.345726
Target:  5'- -cGCG-UCGAgCGCGUCGA-CGCUUGCc -3'
miRNA:   3'- aaCGCuAGCU-GUGCAGCUaGCGAAUG- -5'
17060 3' -50.9 NC_004333.2 + 30859 0.67 0.842644
Target:  5'- -cGCGAUCagaucauccucgGGCAUGUCGAggaCGC-UGCg -3'
miRNA:   3'- aaCGCUAG------------CUGUGCAGCUa--GCGaAUG- -5'
17060 3' -50.9 NC_004333.2 + 30229 0.69 0.741258
Target:  5'- --uCGAUCGACGCGcCGcgCGCgaucagUGCg -3'
miRNA:   3'- aacGCUAGCUGUGCaGCuaGCGa-----AUG- -5'
17060 3' -50.9 NC_004333.2 + 29752 0.71 0.604788
Target:  5'- -cGCGGugUCGACGcCGcCGAUCGCgagGCg -3'
miRNA:   3'- aaCGCU--AGCUGU-GCaGCUAGCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 28965 0.67 0.814254
Target:  5'- -cGCGGUCGaACGCGgCGAUCagUUGCg -3'
miRNA:   3'- aaCGCUAGC-UGUGCaGCUAGcgAAUG- -5'
17060 3' -50.9 NC_004333.2 + 28757 0.66 0.884996
Target:  5'- -cGCGAgCGcCGCGUCGAcCGCg--- -3'
miRNA:   3'- aaCGCUaGCuGUGCAGCUaGCGaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.