miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 37339 0.66 0.586716
Target:  5'- -aCGUCGaucgGAAagaGCGCCG-CGCCGu -3'
miRNA:   3'- cgGCAGUga--CUUg--CGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 30907 0.66 0.586716
Target:  5'- -gCGUC---GAGCGCGUCGACGCUu- -3'
miRNA:   3'- cgGCAGugaCUUGCGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 3792 0.66 0.586716
Target:  5'- gGCCuUCGCgaucuGCGCaGCgGACGCUGGa -3'
miRNA:   3'- -CGGcAGUGacu--UGCG-CGgCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 15356 0.66 0.586716
Target:  5'- uGCUGaUGCUGAcCGCGCCGcCGCa-- -3'
miRNA:   3'- -CGGCaGUGACUuGCGCGGCuGCGgcu -5'
17070 3' -58 NC_004333.2 + 48094 0.66 0.586716
Target:  5'- cGCCcaaCACgccaGAGCGCGCgGgcaagccagaacGCGCCGAu -3'
miRNA:   3'- -CGGca-GUGa---CUUGCGCGgC------------UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 28303 0.66 0.586716
Target:  5'- cGCgCGUCACggucacguGACGCGCCcgGACGCg-- -3'
miRNA:   3'- -CG-GCAGUGac------UUGCGCGG--CUGCGgcu -5'
17070 3' -58 NC_004333.2 + 23836 0.66 0.586716
Target:  5'- uGCCGuUCGCgcaGAACGacuCGUCGcGCGUCGAg -3'
miRNA:   3'- -CGGC-AGUGa--CUUGC---GCGGC-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 3842 0.66 0.586716
Target:  5'- gGCCGaUCA--GAACGCcacGUCGACGCUGu -3'
miRNA:   3'- -CGGC-AGUgaCUUGCG---CGGCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 40126 0.66 0.585646
Target:  5'- cGCCGUCGauuUUGAugucuugcgaggcGucCGCGCCGugGCGCCGc -3'
miRNA:   3'- -CGGCAGU---GACU-------------U--GCGCGGC--UGCGGCu -5'
17070 3' -58 NC_004333.2 + 8541 0.66 0.583507
Target:  5'- cGCCGUCGCgagGuACGaaaauccugugggaCGUgGugGCCGGg -3'
miRNA:   3'- -CGGCAGUGa--CuUGC--------------GCGgCugCGGCU- -5'
17070 3' -58 NC_004333.2 + 19154 0.66 0.576032
Target:  5'- aCgGUCAC---ACGgGCCG-CGCCGAg -3'
miRNA:   3'- cGgCAGUGacuUGCgCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 10965 0.66 0.576032
Target:  5'- uGUCGUCggcgcaagugACUGu-CGCGCCGGCGUUc- -3'
miRNA:   3'- -CGGCAG----------UGACuuGCGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 30848 0.66 0.576032
Target:  5'- cGUCGUCAU--GACGguCGCCG-CGCCGu -3'
miRNA:   3'- -CGGCAGUGacUUGC--GCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 25391 0.66 0.576032
Target:  5'- aCCGUUACgu-ACGUcgcggcagucGCCGGCGUCGGc -3'
miRNA:   3'- cGGCAGUGacuUGCG----------CGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 26021 0.66 0.576032
Target:  5'- cGCCGcgUACUGGcCGCcgGCauCGACGCCGc -3'
miRNA:   3'- -CGGCa-GUGACUuGCG--CG--GCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 36822 0.66 0.576032
Target:  5'- uGCCGUCGagu-GCGCGCUacggccauCGCCGGc -3'
miRNA:   3'- -CGGCAGUgacuUGCGCGGcu------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 27236 0.66 0.565391
Target:  5'- gGCaCGcaUgGCUGAucGCGCGCCGAcaccauacaacuCGCCGu -3'
miRNA:   3'- -CG-GC--AgUGACU--UGCGCGGCU------------GCGGCu -5'
17070 3' -58 NC_004333.2 + 38620 0.66 0.565391
Target:  5'- uGUCGUUGCcgUGAGCGCGUCGgacggcaacGCGUCGc -3'
miRNA:   3'- -CGGCAGUG--ACUUGCGCGGC---------UGCGGCu -5'
17070 3' -58 NC_004333.2 + 41242 0.66 0.565391
Target:  5'- cGCCGUCGCUGcGCuuccCGCagauCGACaCCGAa -3'
miRNA:   3'- -CGGCAGUGACuUGc---GCG----GCUGcGGCU- -5'
17070 3' -58 NC_004333.2 + 1636 0.66 0.565391
Target:  5'- cGUCGUCGgcggcguagccCUGAAUGCGCUG-CGCgGu -3'
miRNA:   3'- -CGGCAGU-----------GACUUGCGCGGCuGCGgCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.