miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17075 3' -61.1 NC_004333.2 + 45546 0.66 0.384627
Target:  5'- uGACCUGCucGGGCGGCagGUGg-ACGCCGu -3'
miRNA:   3'- -UUGGGCGu-CCUGUCG--CGCagUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 6585 0.66 0.384627
Target:  5'- aAGCCCGCAucgccgccACGGCGCGccgcccaGCGCCGc -3'
miRNA:   3'- -UUGGGCGUcc------UGUCGCGCag-----UGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 28771 0.66 0.384627
Target:  5'- cGACCgCGCGGGucgcgGCGGCGCGacuucccaUCGCGUa- -3'
miRNA:   3'- -UUGG-GCGUCC-----UGUCGCGC--------AGUGCGgc -5'
17075 3' -61.1 NC_004333.2 + 36343 0.66 0.375953
Target:  5'- ---gCGCAGGACGuCGCGUguCGCUGc -3'
miRNA:   3'- uuggGCGUCCUGUcGCGCAguGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 26825 0.66 0.375953
Target:  5'- cGGCCUGCAGcgucguagcGAguGCugucGCGUCGCGCuCGg -3'
miRNA:   3'- -UUGGGCGUC---------CUguCG----CGCAGUGCG-GC- -5'
17075 3' -61.1 NC_004333.2 + 47070 0.66 0.375953
Target:  5'- uGCgCGCAacGugAGCGCGaucuuUCGCGCCGc -3'
miRNA:   3'- uUGgGCGUc-CugUCGCGC-----AGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 21581 0.66 0.375953
Target:  5'- cGCCCGUc-GACAGUGaaaUCACGCCa -3'
miRNA:   3'- uUGGGCGucCUGUCGCgc-AGUGCGGc -5'
17075 3' -61.1 NC_004333.2 + 34827 0.66 0.375953
Target:  5'- cAUCUGCAuGGAUaucgcgGGCgGCGUCACGUCa -3'
miRNA:   3'- uUGGGCGU-CCUG------UCG-CGCAGUGCGGc -5'
17075 3' -61.1 NC_004333.2 + 36082 0.66 0.375953
Target:  5'- uGGCCCGUGacGCGGCGCuG-CGCGCCa -3'
miRNA:   3'- -UUGGGCGUccUGUCGCG-CaGUGCGGc -5'
17075 3' -61.1 NC_004333.2 + 13894 0.66 0.367412
Target:  5'- cGGCCgGCAcGGGCuGCGCGgCGgcUGCCGu -3'
miRNA:   3'- -UUGGgCGU-CCUGuCGCGCaGU--GCGGC- -5'
17075 3' -61.1 NC_004333.2 + 28127 0.66 0.367412
Target:  5'- -uCUgGCAGGAC-GUGC-UUACGCCGa -3'
miRNA:   3'- uuGGgCGUCCUGuCGCGcAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 16841 0.66 0.359006
Target:  5'- cGCUCGa---GCAGCGCGUCGCgGCCa -3'
miRNA:   3'- uUGGGCguccUGUCGCGCAGUG-CGGc -5'
17075 3' -61.1 NC_004333.2 + 9016 0.66 0.359006
Target:  5'- cGGCuuGcCAGG-CGGCGCGcUCGCuGCCu -3'
miRNA:   3'- -UUGggC-GUCCuGUCGCGC-AGUG-CGGc -5'
17075 3' -61.1 NC_004333.2 + 771 0.66 0.359006
Target:  5'- cGCUCGCGGGcgGCGGCaCGaUCGCGCUc -3'
miRNA:   3'- uUGGGCGUCC--UGUCGcGC-AGUGCGGc -5'
17075 3' -61.1 NC_004333.2 + 41315 0.66 0.350734
Target:  5'- cGAUCUGCGGGaagcGCAGCGaCGgcgaCACGaCCGg -3'
miRNA:   3'- -UUGGGCGUCC----UGUCGC-GCa---GUGC-GGC- -5'
17075 3' -61.1 NC_004333.2 + 40024 0.66 0.350734
Target:  5'- gAACUCGCGcGGcgccACGGCGCGg-ACGCCu -3'
miRNA:   3'- -UUGGGCGU-CC----UGUCGCGCagUGCGGc -5'
17075 3' -61.1 NC_004333.2 + 31318 0.66 0.34828
Target:  5'- gAACaCCGa--GACGGCGCugcgccgcgcggccGUCGCGCCGg -3'
miRNA:   3'- -UUG-GGCgucCUGUCGCG--------------CAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 21238 0.67 0.334602
Target:  5'- cGGCCUGC-GG-CAGCGCGaagcgcaccaUCACGUCa -3'
miRNA:   3'- -UUGGGCGuCCuGUCGCGC----------AGUGCGGc -5'
17075 3' -61.1 NC_004333.2 + 45243 0.67 0.333809
Target:  5'- cGACCUGUccGGCAucgaagcGCGCGUgGCGCCu -3'
miRNA:   3'- -UUGGGCGucCUGU-------CGCGCAgUGCGGc -5'
17075 3' -61.1 NC_004333.2 + 9110 0.67 0.319019
Target:  5'- cGugUCGCAGGucgccaaagGCAGCGag-CGCGCCGc -3'
miRNA:   3'- -UugGGCGUCC---------UGUCGCgcaGUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.