miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17080 3' -57.5 NC_004333.2 + 13085 0.66 0.611416
Target:  5'- cGCGcagGCguuGAUGCCCGGCgcgaacgucGAUUugUCGa -3'
miRNA:   3'- -CGCua-CG---CUGCGGGCCG---------CUGAugAGC- -5'
17080 3' -57.5 NC_004333.2 + 37692 0.66 0.611416
Target:  5'- cCGGccCGGCGCgUGGCGGCUcaauggccuGCUCGa -3'
miRNA:   3'- cGCUacGCUGCGgGCCGCUGA---------UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 5521 0.66 0.611416
Target:  5'- cGCGGggauauaggucaUGcCGugG-CCGGCGACgGCUUGg -3'
miRNA:   3'- -CGCU------------AC-GCugCgGGCCGCUGaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 14575 0.66 0.60063
Target:  5'- uGCGAUGCGACGUUCaaGGaCGGCcagGCgucCGa -3'
miRNA:   3'- -CGCUACGCUGCGGG--CC-GCUGa--UGa--GC- -5'
17080 3' -57.5 NC_004333.2 + 9534 0.66 0.60063
Target:  5'- gGCGGUGCGgcacccGCGCCUGGUGcGCaggACggCGa -3'
miRNA:   3'- -CGCUACGC------UGCGGGCCGC-UGa--UGa-GC- -5'
17080 3' -57.5 NC_004333.2 + 30816 0.66 0.59417
Target:  5'- aGCGAUucggugaguaccucgGCGACGCCaCGGcCGA--GCUUGc -3'
miRNA:   3'- -CGCUA---------------CGCUGCGG-GCC-GCUgaUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 3647 0.66 0.589869
Target:  5'- cGCGAUGUGGCGCacuauguggUCGGCcgacgcGCUGCgCGg -3'
miRNA:   3'- -CGCUACGCUGCG---------GGCCGc-----UGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 47486 0.66 0.589869
Target:  5'- gGCGAgcgGCGAUGUagCuGCGAUUGCUUGc -3'
miRNA:   3'- -CGCUa--CGCUGCGg-GcCGCUGAUGAGC- -5'
17080 3' -57.5 NC_004333.2 + 11701 0.66 0.589869
Target:  5'- uCGAcGCaGCGCCgGGCGGCgUGCUgGc -3'
miRNA:   3'- cGCUaCGcUGCGGgCCGCUG-AUGAgC- -5'
17080 3' -57.5 NC_004333.2 + 9008 0.66 0.589869
Target:  5'- gGCGuucGCGGCuuGCCaGGCGGCgcGCUCGc -3'
miRNA:   3'- -CGCua-CGCUG--CGGgCCGCUGa-UGAGC- -5'
17080 3' -57.5 NC_004333.2 + 36322 0.66 0.579143
Target:  5'- uGC-AUGuCGugGCUCGGCGAgguCUACUa- -3'
miRNA:   3'- -CGcUAC-GCugCGGGCCGCU---GAUGAgc -5'
17080 3' -57.5 NC_004333.2 + 41298 0.66 0.579143
Target:  5'- aGCGAcgGCGACacgaCCGGCGACagguagccCUCGc -3'
miRNA:   3'- -CGCUa-CGCUGcg--GGCCGCUGau------GAGC- -5'
17080 3' -57.5 NC_004333.2 + 24577 0.66 0.579143
Target:  5'- cGCGGUGUGAUGCUgaaaUGacCGACUAuCUCGg -3'
miRNA:   3'- -CGCUACGCUGCGG----GCc-GCUGAU-GAGC- -5'
17080 3' -57.5 NC_004333.2 + 6837 0.66 0.578073
Target:  5'- gGCGggGCacucgucGGCuaCCGGCGGCUGCg-- -3'
miRNA:   3'- -CGCuaCG-------CUGcgGGCCGCUGAUGagc -5'
17080 3' -57.5 NC_004333.2 + 23619 0.66 0.568459
Target:  5'- uGCGuucGCGACaGCUacgcagauCGGCGGCUACcCGa -3'
miRNA:   3'- -CGCua-CGCUG-CGG--------GCCGCUGAUGaGC- -5'
17080 3' -57.5 NC_004333.2 + 11735 0.66 0.557825
Target:  5'- aCGAaaUGaaGCGCCUGcGCGACUACUgGc -3'
miRNA:   3'- cGCU--ACgcUGCGGGC-CGCUGAUGAgC- -5'
17080 3' -57.5 NC_004333.2 + 23658 0.67 0.547249
Target:  5'- uUGGUGgaUGAUGCUCGGCGGCgGCUUc -3'
miRNA:   3'- cGCUAC--GCUGCGGGCCGCUGaUGAGc -5'
17080 3' -57.5 NC_004333.2 + 6397 0.67 0.547249
Target:  5'- cGCGGUGCGGuCGUCCucaCGGCUGCg-- -3'
miRNA:   3'- -CGCUACGCU-GCGGGcc-GCUGAUGagc -5'
17080 3' -57.5 NC_004333.2 + 46994 0.67 0.536736
Target:  5'- cGCGAggcuucGCGGCGCUcgCGGCG-CUGCa-- -3'
miRNA:   3'- -CGCUa-----CGCUGCGG--GCCGCuGAUGagc -5'
17080 3' -57.5 NC_004333.2 + 31230 0.67 0.536736
Target:  5'- cCGGUcGCGACGgCCGcGCGGCgcagcgccguCUCGg -3'
miRNA:   3'- cGCUA-CGCUGCgGGC-CGCUGau--------GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.