miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17084 5' -60.3 NC_004333.2 + 48188 0.69 0.299272
Target:  5'- -gGUCACcauGCCGGCGCGgU--GCGCGCg -3'
miRNA:   3'- cgCAGUG---CGGCCGCGUgGgcUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 48091 0.68 0.329064
Target:  5'- aCGagGCGCaGGCGgcaACCgGGCGCGCg -3'
miRNA:   3'- cGCagUGCGgCCGCg--UGGgCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 47973 0.67 0.369302
Target:  5'- gGCGUCAuCGgCGGUGUGCggcugugcuacaUCGGCGCGUu -3'
miRNA:   3'- -CGCAGU-GCgGCCGCGUG------------GGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 47811 0.69 0.313156
Target:  5'- -aGUCG-GCCGGgGUguacgagGCCaCGGCGCGCg -3'
miRNA:   3'- cgCAGUgCGGCCgCG-------UGG-GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 47665 0.69 0.285176
Target:  5'- uGCGUCGaGUucauCGGUGCGCUCGGCAagGCg -3'
miRNA:   3'- -CGCAGUgCG----GCCGCGUGGGCUGUg-CG- -5'
17084 5' -60.3 NC_004333.2 + 47567 0.77 0.087711
Target:  5'- -gGUCGCGCCGGCcgGCGCCuCGuucaGCGCg -3'
miRNA:   3'- cgCAGUGCGGCCG--CGUGG-GCug--UGCG- -5'
17084 5' -60.3 NC_004333.2 + 47537 0.7 0.27161
Target:  5'- gGCaGUCGcCGCCGGCGCguuGCUaguCGAUGCGUc -3'
miRNA:   3'- -CG-CAGU-GCGGCCGCG---UGG---GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 47467 0.68 0.35281
Target:  5'- aGCaaCGCGCCGGCgGCGaCUGcCGCGCu -3'
miRNA:   3'- -CGcaGUGCGGCCG-CGUgGGCuGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 47372 0.69 0.294987
Target:  5'- ---aCACGCCGcccgaugaaacgaaaGCGCcgaCCGACGCGCa -3'
miRNA:   3'- cgcaGUGCGGC---------------CGCGug-GGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 47125 0.68 0.343964
Target:  5'- cGCGcaucCugGCCGGaugacaucgcguuCGUcCCCGAUGCGCa -3'
miRNA:   3'- -CGCa---GugCGGCC-------------GCGuGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 47027 0.7 0.25224
Target:  5'- uGCuUguCGUCGGCGCGCgCCGccuuggcuGCGCGCg -3'
miRNA:   3'- -CGcAguGCGGCCGCGUG-GGC--------UGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 46938 0.72 0.195796
Target:  5'- aGCcUCGCGCgcagccaaggCGGCGCGCgCCGACGacaaGCa -3'
miRNA:   3'- -CGcAGUGCG----------GCCGCGUG-GGCUGUg---CG- -5'
17084 5' -60.3 NC_004333.2 + 46875 0.66 0.449757
Target:  5'- cGUGUUGCGCaCGGUaUAgaCGGCACGCu -3'
miRNA:   3'- -CGCAGUGCG-GCCGcGUggGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 46771 0.73 0.154752
Target:  5'- aGUGUC-CGCC-GCGCuGCUCGGCACGUc -3'
miRNA:   3'- -CGCAGuGCGGcCGCG-UGGGCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 46297 0.68 0.326755
Target:  5'- uUGUCcuggaugacuucgaGCGCCuGGCGCugAUCCGGCGCGa -3'
miRNA:   3'- cGCAG--------------UGCGG-CCGCG--UGGGCUGUGCg -5'
17084 5' -60.3 NC_004333.2 + 46202 0.73 0.163141
Target:  5'- cGCGUCucGCGCCGGaucaGCGCCaGGCGCu- -3'
miRNA:   3'- -CGCAG--UGCGGCCg---CGUGGgCUGUGcg -5'
17084 5' -60.3 NC_004333.2 + 45659 0.7 0.239968
Target:  5'- cGCG-CGCGCUGcGCauGCACCUaccgagcgGGCGCGCg -3'
miRNA:   3'- -CGCaGUGCGGC-CG--CGUGGG--------CUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 45090 0.7 0.258567
Target:  5'- aGCGcCACGCgCGGUcgaGCGgCCGGacaGCGCg -3'
miRNA:   3'- -CGCaGUGCG-GCCG---CGUgGGCUg--UGCG- -5'
17084 5' -60.3 NC_004333.2 + 45032 0.7 0.27161
Target:  5'- cGCGUgGCGCuggCGGCGCGCaaacgCUGAacacCGCGCg -3'
miRNA:   3'- -CGCAgUGCG---GCCGCGUG-----GGCU----GUGCG- -5'
17084 5' -60.3 NC_004333.2 + 45017 0.68 0.351999
Target:  5'- uGCG-CGCGCaGGauaGCugCCGACuucuucgGCGCg -3'
miRNA:   3'- -CGCaGUGCGgCCg--CGugGGCUG-------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.