miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17089 5' -53.6 NC_004333.2 + 47966 0.72 0.427626
Target:  5'- gGUCGucGGCGU-CAUCGGCGGugUGCGg -3'
miRNA:   3'- -UAGC--CCGCAuGUAGCUGUUugGCGCg -5'
17089 5' -53.6 NC_004333.2 + 47626 0.67 0.730498
Target:  5'- -aUGGGCG-GCAcguUCGAU---CCGCGCg -3'
miRNA:   3'- uaGCCCGCaUGU---AGCUGuuuGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 47157 0.67 0.719666
Target:  5'- aGUCGGaGCG-GCG-CGAaAGAUCGCGCu -3'
miRNA:   3'- -UAGCC-CGCaUGUaGCUgUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 46460 0.66 0.782877
Target:  5'- cUCGGGUGcccuuUGCucacCGACuguccuAGGCCGCGCc -3'
miRNA:   3'- uAGCCCGC-----AUGua--GCUG------UUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 45768 0.72 0.408403
Target:  5'- -gCaGGCGUGCGUUGugGuagcuGAUCGCGCg -3'
miRNA:   3'- uaGcCCGCAUGUAGCugU-----UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 45346 0.66 0.751842
Target:  5'- uUCGGGaCGU-CGUUcGCGAGCCaagGCGCc -3'
miRNA:   3'- uAGCCC-GCAuGUAGcUGUUUGG---CGCG- -5'
17089 5' -53.6 NC_004333.2 + 45301 0.72 0.417947
Target:  5'- cUCGaGGCGUucgagaaggGCAUCGACGGuuacaagcucGCCGCGa -3'
miRNA:   3'- uAGC-CCGCA---------UGUAGCUGUU----------UGGCGCg -5'
17089 5' -53.6 NC_004333.2 + 45207 0.73 0.389729
Target:  5'- uUCGGGCGacgACAgguaGGCGcgaucGCCGCGCa -3'
miRNA:   3'- uAGCCCGCa--UGUag--CUGUu----UGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 43530 0.79 0.156113
Target:  5'- uUCuGGCGUAUcUCGACGauGACCGCGCc -3'
miRNA:   3'- uAGcCCGCAUGuAGCUGU--UUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 43527 0.67 0.708744
Target:  5'- gAUUGcGGCGcGCAagCGcGCGAugCGCGCg -3'
miRNA:   3'- -UAGC-CCGCaUGUa-GC-UGUUugGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 43431 0.68 0.63076
Target:  5'- cUCGGGuCGgGC--UGACGGACgCGCGCa -3'
miRNA:   3'- uAGCCC-GCaUGuaGCUGUUUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 42211 0.7 0.516937
Target:  5'- cUCGGGCGUgagcgucaugucguGCAcCGGCAAcUgGCGCa -3'
miRNA:   3'- uAGCCCGCA--------------UGUaGCUGUUuGgCGCG- -5'
17089 5' -53.6 NC_004333.2 + 41932 0.66 0.782877
Target:  5'- uUCGGGCGaaUugAUCGGgAAACgGaUGCc -3'
miRNA:   3'- uAGCCCGC--AugUAGCUgUUUGgC-GCG- -5'
17089 5' -53.6 NC_004333.2 + 41873 0.67 0.719666
Target:  5'- cGUCGGGCagcUugAcCGgaaACGGACUGCGCa -3'
miRNA:   3'- -UAGCCCGc--AugUaGC---UGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 41712 0.69 0.579299
Target:  5'- uUCGGGCGgcacgGCGcgaucaacgaggagaUCGGCGcgggcGACuCGCGCg -3'
miRNA:   3'- uAGCCCGCa----UGU---------------AGCUGU-----UUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 41429 0.66 0.782877
Target:  5'- gGUCGGGCGcgUGC-UCGAgcgccacacguaCAcACuCGCGCg -3'
miRNA:   3'- -UAGCCCGC--AUGuAGCU------------GUuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 41400 0.66 0.741227
Target:  5'- uUCGcGGUGaACAUCGA---GCaCGCGCa -3'
miRNA:   3'- uAGC-CCGCaUGUAGCUguuUG-GCGCG- -5'
17089 5' -53.6 NC_004333.2 + 41290 0.66 0.741227
Target:  5'- --aGGGCGgcgACuUCGACGAgGCCGaGCu -3'
miRNA:   3'- uagCCCGCa--UGuAGCUGUU-UGGCgCG- -5'
17089 5' -53.6 NC_004333.2 + 40369 1.11 0.000948
Target:  5'- gAUCGGGCGUACAUCGACAAACCGCGCa -3'
miRNA:   3'- -UAGCCCGCAUGUAGCUGUUUGGCGCG- -5'
17089 5' -53.6 NC_004333.2 + 40105 0.7 0.530953
Target:  5'- -gCGaGGCGUccGCGcCGugGcGCCGCGCg -3'
miRNA:   3'- uaGC-CCGCA--UGUaGCugUuUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.