miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17105 5' -59.6 NC_004333.2 + 25504 0.66 0.491016
Target:  5'- -cCGGcacgcccGGCGUGA-CG-GCCGCCGCc -3'
miRNA:   3'- gaGCCac-----UCGCGCUaGCaCGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 28881 0.66 0.491016
Target:  5'- gCUC-GUGccGCGCGAUCGcGCuCGgCGCa -3'
miRNA:   3'- -GAGcCACu-CGCGCUAGCaCG-GCgGCG- -5'
17105 5' -59.6 NC_004333.2 + 15866 0.66 0.491016
Target:  5'- cCUUGuGcGAGCccGCGAgCGaGCCGCCGUg -3'
miRNA:   3'- -GAGC-CaCUCG--CGCUaGCaCGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 35473 0.66 0.491016
Target:  5'- gUCGGcaccgucaacGGGCcgGUGAgCGUGCCGCCuGCg -3'
miRNA:   3'- gAGCCa---------CUCG--CGCUaGCACGGCGG-CG- -5'
17105 5' -59.6 NC_004333.2 + 20723 0.66 0.491016
Target:  5'- -gCGGUGAugacgGCGCGcgCGcUGCCGgacaUCGCc -3'
miRNA:   3'- gaGCCACU-----CGCGCuaGC-ACGGC----GGCG- -5'
17105 5' -59.6 NC_004333.2 + 40777 0.66 0.490016
Target:  5'- -cCGGUGAcgaucGCgGCGAUCGgguugguguucuuUGCgGUCGCg -3'
miRNA:   3'- gaGCCACU-----CG-CGCUAGC-------------ACGgCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 5315 0.66 0.481057
Target:  5'- uUCGGgucuuucGCGCcuucgcgcugGAUCGUcacGCCGCCGUg -3'
miRNA:   3'- gAGCCacu----CGCG----------CUAGCA---CGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 38458 0.66 0.481057
Target:  5'- aUCcGUG-GCGCGAcgcgaugaUUGcGCUGCCGCa -3'
miRNA:   3'- gAGcCACuCGCGCU--------AGCaCGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 4793 0.66 0.471198
Target:  5'- --gGGUGAGCccGCGucgCGUGacgcucauaCGCCGCc -3'
miRNA:   3'- gagCCACUCG--CGCua-GCACg--------GCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 33485 0.66 0.471198
Target:  5'- -aCGGUucGGCGCGcaGUCGcUG-CGCCGCa -3'
miRNA:   3'- gaGCCAc-UCGCGC--UAGC-ACgGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 14314 0.66 0.471198
Target:  5'- gCUCGaaaGAgGCGCGcgCGcacGCCGUCGCa -3'
miRNA:   3'- -GAGCca-CU-CGCGCuaGCa--CGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 36366 0.66 0.46826
Target:  5'- aCUCGGgcGGCGCGuaucgcauggcgcaGgacgucgCGUGUCGCUGCa -3'
miRNA:   3'- -GAGCCacUCGCGC--------------Ua------GCACGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 38292 0.66 0.461442
Target:  5'- aUCGaUGcacGCGCGAcCGUGCaCGCgGCg -3'
miRNA:   3'- gAGCcACu--CGCGCUaGCACG-GCGgCG- -5'
17105 5' -59.6 NC_004333.2 + 17456 0.66 0.461442
Target:  5'- -cCGGaUGuGGCGCaacgCGaagGCCGCCGCg -3'
miRNA:   3'- gaGCC-AC-UCGCGcua-GCa--CGGCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 32733 0.66 0.461442
Target:  5'- -cCGGcGAgcagaacgucacGCGCaGGUCGcUGCCGCCGg -3'
miRNA:   3'- gaGCCaCU------------CGCG-CUAGC-ACGGCGGCg -5'
17105 5' -59.6 NC_004333.2 + 27960 0.66 0.461442
Target:  5'- aCUCGGgaucgauguacGAGUauGCGAUCGUGCC-CUGa -3'
miRNA:   3'- -GAGCCa----------CUCG--CGCUAGCACGGcGGCg -5'
17105 5' -59.6 NC_004333.2 + 14088 0.66 0.461442
Target:  5'- -cUGaUGcAGCGCGAUCGUcauGCCGUCGa -3'
miRNA:   3'- gaGCcAC-UCGCGCUAGCA---CGGCGGCg -5'
17105 5' -59.6 NC_004333.2 + 28955 0.66 0.451794
Target:  5'- -gCGccGAGCGCGAUCGcGCgGCacgaGCg -3'
miRNA:   3'- gaGCcaCUCGCGCUAGCaCGgCGg---CG- -5'
17105 5' -59.6 NC_004333.2 + 33018 0.66 0.442257
Target:  5'- aUCGGgaucGGCGuCGAUCGcuuUGagCGCCGCa -3'
miRNA:   3'- gAGCCac--UCGC-GCUAGC---ACg-GCGGCG- -5'
17105 5' -59.6 NC_004333.2 + 37126 0.66 0.442257
Target:  5'- cCUCcGUcauGuGCGCGAUCGcGCUGCUGUc -3'
miRNA:   3'- -GAGcCA---CuCGCGCUAGCaCGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.