miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17108 5' -57.3 NC_004333.2 + 26477 0.66 0.592423
Target:  5'- cGUCGugAAUGUG-CGUCGcGUGCCgCAc -3'
miRNA:   3'- cCGGCugUUGCACgGCAGC-UACGG-GU- -5'
17108 5' -57.3 NC_004333.2 + 26286 0.66 0.592423
Target:  5'- uGGCgCG-CAcCGcGCCGUCGAUGCg-- -3'
miRNA:   3'- -CCG-GCuGUuGCaCGGCAGCUACGggu -5'
17108 5' -57.3 NC_004333.2 + 42099 0.66 0.592423
Target:  5'- uGCgCGACGagGCGUGUCGcgaGGUGCgCCAg -3'
miRNA:   3'- cCG-GCUGU--UGCACGGCag-CUACG-GGU- -5'
17108 5' -57.3 NC_004333.2 + 19639 0.66 0.592423
Target:  5'- cGGCCGACGcUG-GCCGUCaacaGCUCGc -3'
miRNA:   3'- -CCGGCUGUuGCaCGGCAGcua-CGGGU- -5'
17108 5' -57.3 NC_004333.2 + 12519 0.66 0.581614
Target:  5'- cGGCCGACGACGauaUCGaCGGugUGCUCAc -3'
miRNA:   3'- -CCGGCUGUUGCac-GGCaGCU--ACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 8100 0.66 0.581614
Target:  5'- gGGUCGACGuag-GUCGUCagguaguucggGAUGCCCGa -3'
miRNA:   3'- -CCGGCUGUugcaCGGCAG-----------CUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 22356 0.66 0.580535
Target:  5'- aGCCGACGaaaccugcgccgcACGcGCCGagGAUGgCCGu -3'
miRNA:   3'- cCGGCUGU-------------UGCaCGGCagCUACgGGU- -5'
17108 5' -57.3 NC_004333.2 + 7796 0.66 0.570845
Target:  5'- cGGCCuGAuCAACGauCCGUCGcUGUCCGc -3'
miRNA:   3'- -CCGG-CU-GUUGCacGGCAGCuACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 622 0.66 0.570845
Target:  5'- -cCCGACAGCGgGCCGgugcugccagUGAcGCCCGu -3'
miRNA:   3'- ccGGCUGUUGCaCGGCa---------GCUaCGGGU- -5'
17108 5' -57.3 NC_004333.2 + 8223 0.66 0.569771
Target:  5'- cGGCCGACcuguCGccacaccUGUCGUCGAcggGCUCGu -3'
miRNA:   3'- -CCGGCUGuu--GC-------ACGGCAGCUa--CGGGU- -5'
17108 5' -57.3 NC_004333.2 + 47528 0.66 0.560125
Target:  5'- cGCCGGC-GCGuUGCUaGUCGAUGCgUCGa -3'
miRNA:   3'- cCGGCUGuUGC-ACGG-CAGCUACG-GGU- -5'
17108 5' -57.3 NC_004333.2 + 21779 0.66 0.560125
Target:  5'- uGCUGGCGcACGUGCgcauagagcgCGUCGAgcUGCUCGg -3'
miRNA:   3'- cCGGCUGU-UGCACG----------GCAGCU--ACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 45730 0.66 0.560125
Target:  5'- -cCCGGCGcgaACGUGCCGaucgCGAUauacgacaaGCCCGa -3'
miRNA:   3'- ccGGCUGU---UGCACGGCa---GCUA---------CGGGU- -5'
17108 5' -57.3 NC_004333.2 + 15208 0.66 0.559056
Target:  5'- cGGCCGGCAgcaggccggucagACG-GCCGUacagauagGGUGCCa- -3'
miRNA:   3'- -CCGGCUGU-------------UGCaCGGCAg-------CUACGGgu -5'
17108 5' -57.3 NC_004333.2 + 8649 0.67 0.55372
Target:  5'- cGGCgCGGCGcccggcuugcucgugACgGUGCCGUCGgcGUUCAg -3'
miRNA:   3'- -CCG-GCUGU---------------UG-CACGGCAGCuaCGGGU- -5'
17108 5' -57.3 NC_004333.2 + 20579 0.67 0.549462
Target:  5'- cGGCgCGGCGGCG-GCCGgcagCGGuUGCgCGg -3'
miRNA:   3'- -CCG-GCUGUUGCaCGGCa---GCU-ACGgGU- -5'
17108 5' -57.3 NC_004333.2 + 2413 0.67 0.549462
Target:  5'- aGCUGcGCAACG-GCCGcaCGGUGCUCGc -3'
miRNA:   3'- cCGGC-UGUUGCaCGGCa-GCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 39573 0.67 0.538863
Target:  5'- aGCCGAuCGGCGUGUCGUCcGUuacGCCg- -3'
miRNA:   3'- cCGGCU-GUUGCACGGCAGcUA---CGGgu -5'
17108 5' -57.3 NC_004333.2 + 2194 0.67 0.538863
Target:  5'- cGCCGaguuGCAACGcGCCGaguucgaggCGAUGCUCGc -3'
miRNA:   3'- cCGGC----UGUUGCaCGGCa--------GCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 35488 0.67 0.538863
Target:  5'- gGGCCgGugAGCGUGCCGccugCGAgcgGCa-- -3'
miRNA:   3'- -CCGG-CugUUGCACGGCa---GCUa--CGggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.