miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17155 3' -50.3 NC_004333.2 + 28841 0.68 0.826652
Target:  5'- gCGcCGCCGCGAcccGCGCGgUCGAc--- -3'
miRNA:   3'- aGCuGUGGCGCU---CGCGCaAGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 31308 0.67 0.886879
Target:  5'- aCGGCGCUGCGccGCGCGgccgUCGc---- -3'
miRNA:   3'- aGCUGUGGCGCu-CGCGCa---AGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 15666 0.67 0.879062
Target:  5'- cCGugACCGaCGAGCaGCGUgCGAc--- -3'
miRNA:   3'- aGCugUGGC-GCUCG-CGCAaGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 17416 0.67 0.870969
Target:  5'- cUUGACACCGCuGcgugcgcuauacAGCGCGaUCAGAu-- -3'
miRNA:   3'- -AGCUGUGGCG-C------------UCGCGCaAGUUUuuc -5'
17155 3' -50.3 NC_004333.2 + 12032 0.67 0.862609
Target:  5'- gUCGACGCUGCGuGCaagGCGcUCGAc--- -3'
miRNA:   3'- -AGCUGUGGCGCuCG---CGCaAGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 11697 0.68 0.857467
Target:  5'- uUCGACACguuCGCGcgcgaagugacggccGGCGCGUuUCAGGAu- -3'
miRNA:   3'- -AGCUGUG---GCGC---------------UCGCGCA-AGUUUUuc -5'
17155 3' -50.3 NC_004333.2 + 6709 0.68 0.835999
Target:  5'- gCG-CGCUGcCGAGCGCGaUCGAGuuGa -3'
miRNA:   3'- aGCuGUGGC-GCUCGCGCaAGUUUuuC- -5'
17155 3' -50.3 NC_004333.2 + 17360 0.68 0.835999
Target:  5'- -gGACGCUGCGccGGCcgGCGUUCAcgucGAAGGc -3'
miRNA:   3'- agCUGUGGCGC--UCG--CGCAAGU----UUUUC- -5'
17155 3' -50.3 NC_004333.2 + 7753 0.68 0.826652
Target:  5'- aCGACGCCGUGGuCGgGUUCGc---- -3'
miRNA:   3'- aGCUGUGGCGCUcGCgCAAGUuuuuc -5'
17155 3' -50.3 NC_004333.2 + 47252 0.67 0.886879
Target:  5'- cUCuGCugCGCGgcAGCGCGUUCu----- -3'
miRNA:   3'- -AGcUGugGCGC--UCGCGCAAGuuuuuc -5'
17155 3' -50.3 NC_004333.2 + 3372 0.67 0.886879
Target:  5'- cCGcGCGCCGCc-GCGCGcaCAAGGAGa -3'
miRNA:   3'- aGC-UGUGGCGcuCGCGCaaGUUUUUC- -5'
17155 3' -50.3 NC_004333.2 + 20677 0.67 0.893673
Target:  5'- cCGACugCGCGAGgccgagcCGCGccugCAGAAAc -3'
miRNA:   3'- aGCUGugGCGCUC-------GCGCaa--GUUUUUc -5'
17155 3' -50.3 NC_004333.2 + 30970 0.66 0.93347
Target:  5'- gUCGACGCgCuCGA-CGCGUUCAAc--- -3'
miRNA:   3'- -AGCUGUG-GcGCUcGCGCAAGUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 37200 0.66 0.93347
Target:  5'- gUCGuGCGgCGUGAGCGC-UUCGAGc-- -3'
miRNA:   3'- -AGC-UGUgGCGCUCGCGcAAGUUUuuc -5'
17155 3' -50.3 NC_004333.2 + 13598 0.66 0.93347
Target:  5'- gCGGCaacGCCGCGAGCaCG-UCGGAcGGc -3'
miRNA:   3'- aGCUG---UGGCGCUCGcGCaAGUUUuUC- -5'
17155 3' -50.3 NC_004333.2 + 18490 0.66 0.927706
Target:  5'- gUCGACGCCGCcGAucgcgaggcguuGCGC-UUCGGAcGGc -3'
miRNA:   3'- -AGCUGUGGCG-CU------------CGCGcAAGUUUuUC- -5'
17155 3' -50.3 NC_004333.2 + 775 0.66 0.915279
Target:  5'- aCGGCGCuCGCGGGCgGCGgcaCGAu--- -3'
miRNA:   3'- aGCUGUG-GCGCUCG-CGCaa-GUUuuuc -5'
17155 3' -50.3 NC_004333.2 + 37404 0.66 0.915279
Target:  5'- gCGACGCagauuCGAGCGCG-UCGAGc-- -3'
miRNA:   3'- aGCUGUGgc---GCUCGCGCaAGUUUuuc -5'
17155 3' -50.3 NC_004333.2 + 25269 0.66 0.908618
Target:  5'- gUCGACGucgagUCGCGcAGCGaGUUCGAGAc- -3'
miRNA:   3'- -AGCUGU-----GGCGC-UCGCgCAAGUUUUuc -5'
17155 3' -50.3 NC_004333.2 + 25237 0.66 0.908618
Target:  5'- gCGGCGgCagGCGAGCGUGUcgaUCGGAGGc -3'
miRNA:   3'- aGCUGUgG--CGCUCGCGCA---AGUUUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.