miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17165 3' -54.1 NC_004333.2 + 13549 0.66 0.794037
Target:  5'- cGCCGGCGGCcaggccgGAUGUgUCGGcuuucucuUUCGUGCc -3'
miRNA:   3'- -UGGCUGCUG-------CUGCA-AGCCc-------AAGCACG- -5'
17165 3' -54.1 NC_004333.2 + 31214 0.66 0.775303
Target:  5'- gGCgGGCGGCGAUGcauucgcCGGGcUCGcGCg -3'
miRNA:   3'- -UGgCUGCUGCUGCaa-----GCCCaAGCaCG- -5'
17165 3' -54.1 NC_004333.2 + 44578 0.66 0.775303
Target:  5'- cACCGACG-CGAUGgUCGG---CGUGUg -3'
miRNA:   3'- -UGGCUGCuGCUGCaAGCCcaaGCACG- -5'
17165 3' -54.1 NC_004333.2 + 19751 0.66 0.769273
Target:  5'- uGCCGucaACGACGcgaucggccgcuccaACGcaCGGGaUCGUGCc -3'
miRNA:   3'- -UGGC---UGCUGC---------------UGCaaGCCCaAGCACG- -5'
17165 3' -54.1 NC_004333.2 + 40958 0.66 0.765225
Target:  5'- cGCaCGGCaGGCGAaaCGuUUCGGGccguucgacUUCGUGCu -3'
miRNA:   3'- -UG-GCUG-CUGCU--GC-AAGCCC---------AAGCACG- -5'
17165 3' -54.1 NC_004333.2 + 26313 0.67 0.755011
Target:  5'- aGCCGGuCGACGACa---GGaUUUGUGCg -3'
miRNA:   3'- -UGGCU-GCUGCUGcaagCCcAAGCACG- -5'
17165 3' -54.1 NC_004333.2 + 24150 0.67 0.744672
Target:  5'- cGCuCGAUGuuCGGCGaUCGGGgcaaGUGCu -3'
miRNA:   3'- -UG-GCUGCu-GCUGCaAGCCCaag-CACG- -5'
17165 3' -54.1 NC_004333.2 + 12518 0.67 0.744672
Target:  5'- gGCCGACGACGAUa-UCGacGGU--GUGCu -3'
miRNA:   3'- -UGGCUGCUGCUGcaAGC--CCAagCACG- -5'
17165 3' -54.1 NC_004333.2 + 39005 0.67 0.734221
Target:  5'- uGCCGgucGCGuCGugGUUCGuc-UCGUGCu -3'
miRNA:   3'- -UGGC---UGCuGCugCAAGCccaAGCACG- -5'
17165 3' -54.1 NC_004333.2 + 7518 0.67 0.734221
Target:  5'- -aUGAC-ACGGCG-UCGGGccgucUCGUGCa -3'
miRNA:   3'- ugGCUGcUGCUGCaAGCCCa----AGCACG- -5'
17165 3' -54.1 NC_004333.2 + 22645 0.67 0.723667
Target:  5'- cGCCGAugucgUGACGACGg-CGGGUuucaccgcgcgcUCGUcGCu -3'
miRNA:   3'- -UGGCU-----GCUGCUGCaaGCCCA------------AGCA-CG- -5'
17165 3' -54.1 NC_004333.2 + 29113 0.67 0.723667
Target:  5'- gAUCGugGGCGGCGcggugcUCGcgcuGGUuaUCGUGCu -3'
miRNA:   3'- -UGGCugCUGCUGCa-----AGC----CCA--AGCACG- -5'
17165 3' -54.1 NC_004333.2 + 26072 0.67 0.713022
Target:  5'- cGCCGcaGCGGCGGCGcUUCcGGaUUCGgGCa -3'
miRNA:   3'- -UGGC--UGCUGCUGC-AAGcCC-AAGCaCG- -5'
17165 3' -54.1 NC_004333.2 + 22591 0.68 0.702299
Target:  5'- cAUCGGCGcuCGuguuguucGCGUccgUCGGGUUCGUcGCg -3'
miRNA:   3'- -UGGCUGCu-GC--------UGCA---AGCCCAAGCA-CG- -5'
17165 3' -54.1 NC_004333.2 + 22367 0.68 0.702299
Target:  5'- uCCGACGAUugGACGUUCGucauGGU-CG-GCg -3'
miRNA:   3'- uGGCUGCUG--CUGCAAGC----CCAaGCaCG- -5'
17165 3' -54.1 NC_004333.2 + 25474 0.68 0.702299
Target:  5'- gAUCGucGCGGCGACagcCGGGUUgCGUGUc -3'
miRNA:   3'- -UGGC--UGCUGCUGcaaGCCCAA-GCACG- -5'
17165 3' -54.1 NC_004333.2 + 27426 0.68 0.699068
Target:  5'- uGCgCGGCGACGGCuGUcgaccaggcgccauUCGGGUaguUCG-GCu -3'
miRNA:   3'- -UG-GCUGCUGCUG-CA--------------AGCCCA---AGCaCG- -5'
17165 3' -54.1 NC_004333.2 + 38938 0.68 0.658836
Target:  5'- cGCgGACgGGCGGCGUUCGuauggcgcccGGUaCGUGUc -3'
miRNA:   3'- -UGgCUG-CUGCUGCAAGC----------CCAaGCACG- -5'
17165 3' -54.1 NC_004333.2 + 5544 0.68 0.658836
Target:  5'- gGCCGGCGACGGC--UUGGcGcgaGUGCa -3'
miRNA:   3'- -UGGCUGCUGCUGcaAGCC-CaagCACG- -5'
17165 3' -54.1 NC_004333.2 + 18560 0.68 0.647882
Target:  5'- aGCCGgcGCGGCGGCGaaucCGaacccGUUCGUGCa -3'
miRNA:   3'- -UGGC--UGCUGCUGCaa--GCc----CAAGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.