miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17171 5' -59.6 NC_004333.2 + 48177 0.66 0.446678
Target:  5'- cGGCGcg--GUGcGCGCGCccgguugccGCCuGCGCCu -3'
miRNA:   3'- uCCGUcauaCAC-CGCGCG---------UGG-CGCGG- -5'
17171 5' -59.6 NC_004333.2 + 48099 0.82 0.034267
Target:  5'- cAGGCGGcaaccggGcGCGCGCACCGCGCCg -3'
miRNA:   3'- -UCCGUCauaca--C-CGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 47981 0.7 0.259405
Target:  5'- cGGCGGUGUGcGGCugugcuacaucgGCGCGuucuggcuugcCCGCGCg -3'
miRNA:   3'- uCCGUCAUACaCCG------------CGCGU-----------GGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 47804 0.69 0.272797
Target:  5'- cGGGguGUAcgagGccacGGCGCGCGaCGUGCCg -3'
miRNA:   3'- -UCCguCAUa---Ca---CCGCGCGUgGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 46201 0.68 0.315524
Target:  5'- cGGCGugAUccucgaacuugccGUaGCGCGCACCGCGCUc -3'
miRNA:   3'- uCCGUcaUA-------------CAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 46183 0.71 0.205693
Target:  5'- uGGGCgaccgaGGgcUG-GGCGCGUcUCGCGCCg -3'
miRNA:   3'- -UCCG------UCauACaCCGCGCGuGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 45270 0.66 0.437078
Target:  5'- cGGGCuuc--GUGGCGCGgacagcugcCGCUGCGCa -3'
miRNA:   3'- -UCCGucauaCACCGCGC---------GUGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 45205 0.67 0.356377
Target:  5'- cGGGCGacgacagGUaGGCGCGauCGCCGCGCa -3'
miRNA:   3'- -UCCGUcaua---CA-CCGCGC--GUGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 44469 0.69 0.301235
Target:  5'- cGGCAGgccguUGUacCGCGCA-CGCGCCg -3'
miRNA:   3'- uCCGUCau---ACAccGCGCGUgGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 43433 0.69 0.293917
Target:  5'- cGGGuCGGgcUGacggacGCGCGCAUCGCGCg -3'
miRNA:   3'- -UCC-GUCauACac----CGCGCGUGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 41647 0.66 0.427597
Target:  5'- cAGGCAGUcaacgaaUGGCGCGUugaaGCCG-GUCg -3'
miRNA:   3'- -UCCGUCAuac----ACCGCGCG----UGGCgCGG- -5'
17171 5' -59.6 NC_004333.2 + 41637 0.74 0.137527
Target:  5'- cGGCAGauUGUcgGGCGCGgGCUGCgGCCg -3'
miRNA:   3'- uCCGUCauACA--CCGCGCgUGGCG-CGG- -5'
17171 5' -59.6 NC_004333.2 + 41432 0.67 0.364811
Target:  5'- -uGCGGUcg--GGCGCGUGCUcgaGCGCCa -3'
miRNA:   3'- ucCGUCAuacaCCGCGCGUGG---CGCGG- -5'
17171 5' -59.6 NC_004333.2 + 37255 0.69 0.301235
Target:  5'- cGGCGcgcGUcGUGagcGGCGUGuCGCCGCGCUg -3'
miRNA:   3'- uCCGU---CA-UACa--CCGCGC-GUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 36166 0.68 0.31629
Target:  5'- -cGUAcGUGgcUGGCGCGCagcGCCGCGUCa -3'
miRNA:   3'- ucCGU-CAUacACCGCGCG---UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 36082 0.66 0.427597
Target:  5'- uGGCcc-GUGacGCgGCGCugCGCGCCa -3'
miRNA:   3'- uCCGucaUACacCG-CGCGugGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 33490 0.69 0.272797
Target:  5'- cGGCuacg-GUucGGCGCGCagucGCUGCGCCg -3'
miRNA:   3'- uCCGucauaCA--CCGCGCG----UGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 33450 0.68 0.339924
Target:  5'- cGGCAGcAU-UGGCagcgGCGCGCCGgGCg -3'
miRNA:   3'- uCCGUCaUAcACCG----CGCGUGGCgCGg -5'
17171 5' -59.6 NC_004333.2 + 30493 0.71 0.195145
Target:  5'- gAGGCAGUcgcuacGGCGCGCGaauucgguCCGgCGCCg -3'
miRNA:   3'- -UCCGUCAuaca--CCGCGCGU--------GGC-GCGG- -5'
17171 5' -59.6 NC_004333.2 + 30381 0.67 0.356377
Target:  5'- uGGCGGgugGUGUcgcaGGCGCG-ACgGCgGCCa -3'
miRNA:   3'- uCCGUCa--UACA----CCGCGCgUGgCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.