miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17174 5' -59.8 NC_004333.2 + 2887 0.66 0.438478
Target:  5'- aGCGGCgAGGCugauguuggccgagaCGUGCUgCGCaGCGGUc -3'
miRNA:   3'- cCGCCG-UCUG---------------GCACGAaGCG-CGCCAu -5'
17174 5' -59.8 NC_004333.2 + 2132 0.66 0.425251
Target:  5'- aGGaCGGUuacACCGgGCUcuaUCGCGCGGg- -3'
miRNA:   3'- -CC-GCCGuc-UGGCaCGA---AGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 30408 0.66 0.425251
Target:  5'- cGGCGcCGGACCGaa-UUCGCGCGccGUAg -3'
miRNA:   3'- -CCGCcGUCUGGCacgAAGCGCGC--CAU- -5'
17174 5' -59.8 NC_004333.2 + 5044 0.66 0.425251
Target:  5'- aGGCGGCcGGCUGUugGCcgacgUCGgCGCGGc- -3'
miRNA:   3'- -CCGCCGuCUGGCA--CGa----AGC-GCGCCau -5'
17174 5' -59.8 NC_004333.2 + 25428 0.66 0.415949
Target:  5'- cGGCGGCGG-CCGUcacGCcgggCGUGcCGGUu -3'
miRNA:   3'- -CCGCCGUCuGGCA---CGaa--GCGC-GCCAu -5'
17174 5' -59.8 NC_004333.2 + 9993 0.66 0.415949
Target:  5'- cGCGGC-GACC-UGC-UCGUGUGGg- -3'
miRNA:   3'- cCGCCGuCUGGcACGaAGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 30961 0.67 0.395038
Target:  5'- cGGCGGCcgucaAGcgcgacuccauaaaGCCcUGCUguugcgggcugcUCGCGCGGUAg -3'
miRNA:   3'- -CCGCCG-----UC--------------UGGcACGA------------AGCGCGCCAU- -5'
17174 5' -59.8 NC_004333.2 + 39266 0.67 0.380025
Target:  5'- aGC-GCGGGCCGUGCUgccggugcagCGCGCGc-- -3'
miRNA:   3'- cCGcCGUCUGGCACGAa---------GCGCGCcau -5'
17174 5' -59.8 NC_004333.2 + 23121 0.67 0.371374
Target:  5'- cGGCGGC--ACUGaUGUUgCGCGCGGa- -3'
miRNA:   3'- -CCGCCGucUGGC-ACGAaGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 45295 0.67 0.362014
Target:  5'- aGGuCGGCAccgacaagcacguGGCCGgGCUUCgugGCGCGGa- -3'
miRNA:   3'- -CC-GCCGU-------------CUGGCaCGAAG---CGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 22179 0.67 0.354479
Target:  5'- cGGCGGCGG-CCGgcgGCgguUCG-GCGGc- -3'
miRNA:   3'- -CCGCCGUCuGGCa--CGa--AGCgCGCCau -5'
17174 5' -59.8 NC_004333.2 + 18808 0.67 0.352819
Target:  5'- cGCGGCcgcaGGGCgCGUGCUgcuaucgaagccCGCGCGGc- -3'
miRNA:   3'- cCGCCG----UCUG-GCACGAa-----------GCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 13970 0.68 0.346237
Target:  5'- aGGCGGCGGcCgGUGCgcgcgagcugCGCGCGc-- -3'
miRNA:   3'- -CCGCCGUCuGgCACGaa--------GCGCGCcau -5'
17174 5' -59.8 NC_004333.2 + 24266 0.68 0.338133
Target:  5'- aGGCGGcCGGuACCGUcGCaUUCGCGCu--- -3'
miRNA:   3'- -CCGCC-GUC-UGGCA-CG-AAGCGCGccau -5'
17174 5' -59.8 NC_004333.2 + 4933 0.68 0.330168
Target:  5'- cGGCGGCAGcggcAUCG-GCacggCGCGCGcGUAc -3'
miRNA:   3'- -CCGCCGUC----UGGCaCGaa--GCGCGC-CAU- -5'
17174 5' -59.8 NC_004333.2 + 13960 0.68 0.330168
Target:  5'- cGC-GCAGcCCGUGCcggccgacUUCGCGCGGc- -3'
miRNA:   3'- cCGcCGUCuGGCACG--------AAGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 17305 0.68 0.330168
Target:  5'- cGCgGGCAGGCCG-GCUUUGCcuugcaguaGCGGc- -3'
miRNA:   3'- cCG-CCGUCUGGCaCGAAGCG---------CGCCau -5'
17174 5' -59.8 NC_004333.2 + 5558 0.68 0.330168
Target:  5'- uGGCGcgaguGCAGACCGUucaGCUcgaUUGUGCGGc- -3'
miRNA:   3'- -CCGC-----CGUCUGGCA---CGA---AGCGCGCCau -5'
17174 5' -59.8 NC_004333.2 + 3313 0.68 0.312377
Target:  5'- cGGCGGCGcGCgGUugaauuaaacuaucGCUUCGCGCGa-- -3'
miRNA:   3'- -CCGCCGUcUGgCA--------------CGAAGCGCGCcau -5'
17174 5' -59.8 NC_004333.2 + 28229 0.69 0.299701
Target:  5'- gGGCGcgucacGguGACCGUGaCgcgCGCGCGGc- -3'
miRNA:   3'- -CCGC------CguCUGGCAC-Gaa-GCGCGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.