miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17199 3' -62.9 NC_004333.2 + 45066 0.66 0.325888
Target:  5'- cGCGCG-GCcGCGCCcgGGCaAGaaaACGGCg -3'
miRNA:   3'- -CGCGCgCGaCGUGG--CCG-UCg--UGCCGg -5'
17199 3' -62.9 NC_004333.2 + 5233 0.66 0.310128
Target:  5'- gGCGCaaGCUGCGCUgcucgacaacacgGGCGGCuCGcCCg -3'
miRNA:   3'- -CGCGcgCGACGUGG-------------CCGUCGuGCcGG- -5'
17199 3' -62.9 NC_004333.2 + 22430 0.66 0.303553
Target:  5'- gGCGCGUGCgGCGCaGGUuuCGuCGGCUu -3'
miRNA:   3'- -CGCGCGCGaCGUGgCCGucGU-GCCGG- -5'
17199 3' -62.9 NC_004333.2 + 6853 0.66 0.303553
Target:  5'- -gGCGCGCUGUcguaugcgAUCGGCuaccucgaGGCGCGcGaCCg -3'
miRNA:   3'- cgCGCGCGACG--------UGGCCG--------UCGUGC-C-GG- -5'
17199 3' -62.9 NC_004333.2 + 47588 0.66 0.303553
Target:  5'- gGCGaGUGCauucaaUGUACUGGUcGCGcCGGCCg -3'
miRNA:   3'- -CGCgCGCG------ACGUGGCCGuCGU-GCCGG- -5'
17199 3' -62.9 NC_004333.2 + 30251 0.66 0.302107
Target:  5'- gGCGUGCGCgaguccgacuuggUGCcCuCGGCguacaacacgaaaGGCGgCGGCCa -3'
miRNA:   3'- -CGCGCGCG-------------ACGuG-GCCG-------------UCGU-GCCGG- -5'
17199 3' -62.9 NC_004333.2 + 44604 0.66 0.296374
Target:  5'- cGUGCGCGCgaaGUGCuCGG-GGUgauCGGCCg -3'
miRNA:   3'- -CGCGCGCGa--CGUG-GCCgUCGu--GCCGG- -5'
17199 3' -62.9 NC_004333.2 + 32803 0.66 0.289328
Target:  5'- uGCGCGUGacguuCUGCucGCCGGCuauCGCuGCCg -3'
miRNA:   3'- -CGCGCGC-----GACG--UGGCCGuc-GUGcCGG- -5'
17199 3' -62.9 NC_004333.2 + 32834 0.66 0.289328
Target:  5'- gGUGcCGCGCUuaugGCCGGCGGCAgCGaCCu -3'
miRNA:   3'- -CGC-GCGCGAcg--UGGCCGUCGU-GCcGG- -5'
17199 3' -62.9 NC_004333.2 + 27281 0.66 0.310865
Target:  5'- aCG-GCGaUGUACCGcGCgaAGCACGGUCu -3'
miRNA:   3'- cGCgCGCgACGUGGC-CG--UCGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 47258 0.66 0.310865
Target:  5'- uUGUGCcucuGCUGCG-CGGCAGCGCGuuCu -3'
miRNA:   3'- cGCGCG----CGACGUgGCCGUCGUGCcgG- -5'
17199 3' -62.9 NC_004333.2 + 15472 0.66 0.310865
Target:  5'- cGCG-GCGUuuguuucgcuugUGCACCGGCcacguuacaAGCAuuCGGCg -3'
miRNA:   3'- -CGCgCGCG------------ACGUGGCCG---------UCGU--GCCGg -5'
17199 3' -62.9 NC_004333.2 + 272 0.66 0.325888
Target:  5'- gGCGCaaGCcaaGCCGGCGggcGCACGGgCa -3'
miRNA:   3'- -CGCGcgCGacgUGGCCGU---CGUGCCgG- -5'
17199 3' -62.9 NC_004333.2 + 4277 0.66 0.325888
Target:  5'- aCGCGCaGCUGCAaauCCaGGCgcagaAGCACacGCCg -3'
miRNA:   3'- cGCGCG-CGACGU---GG-CCG-----UCGUGc-CGG- -5'
17199 3' -62.9 NC_004333.2 + 6678 0.66 0.325888
Target:  5'- cUGCGacuGCgGCGCUgGGCGGCGC-GCCg -3'
miRNA:   3'- cGCGCg--CGaCGUGG-CCGUCGUGcCGG- -5'
17199 3' -62.9 NC_004333.2 + 23812 0.66 0.3236
Target:  5'- cGCGCGUcgaGCUGC-CCGuuacgacguccgacGCAacucGCGCGaGCCa -3'
miRNA:   3'- -CGCGCG---CGACGuGGC--------------CGU----CGUGC-CGG- -5'
17199 3' -62.9 NC_004333.2 + 45744 0.66 0.318309
Target:  5'- uCGCGCGCccgcucgguaggUGCAUgcGCAGCGCGcGCg -3'
miRNA:   3'- cGCGCGCG------------ACGUGgcCGUCGUGC-CGg -5'
17199 3' -62.9 NC_004333.2 + 38958 0.66 0.318309
Target:  5'- aGCGCGaaGCgGCG-CGGguGCGCGGaCg -3'
miRNA:   3'- -CGCGCg-CGaCGUgGCCguCGUGCCgG- -5'
17199 3' -62.9 NC_004333.2 + 46177 0.66 0.318309
Target:  5'- -aGCGCGCaccGCGCuCGGCcaaGGuUGCGGUCa -3'
miRNA:   3'- cgCGCGCGa--CGUG-GCCG---UC-GUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 12065 0.66 0.310865
Target:  5'- cCGCaucCGUUGCACC-GCGaUACGGCCg -3'
miRNA:   3'- cGCGc--GCGACGUGGcCGUcGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.