miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17199 3' -62.9 NC_004333.2 + 197 0.66 0.303553
Target:  5'- cCGUGCGCc-CGCCGGCuuGGCuuGcGCCa -3'
miRNA:   3'- cGCGCGCGacGUGGCCG--UCGugC-CGG- -5'
17199 3' -62.9 NC_004333.2 + 272 0.66 0.325888
Target:  5'- gGCGCaaGCcaaGCCGGCGggcGCACGGgCa -3'
miRNA:   3'- -CGCGcgCGacgUGGCCGU---CGUGCCgG- -5'
17199 3' -62.9 NC_004333.2 + 416 0.71 0.134233
Target:  5'- aGCGC-CGacggGCAUUucgGGCGGUACGGCCa -3'
miRNA:   3'- -CGCGcGCga--CGUGG---CCGUCGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 464 0.71 0.134233
Target:  5'- uCGCGCGCUcuacGCGCuCGGCAaCucuguCGGCCu -3'
miRNA:   3'- cGCGCGCGA----CGUG-GCCGUcGu----GCCGG- -5'
17199 3' -62.9 NC_004333.2 + 703 0.74 0.086967
Target:  5'- aCGgGCGU--CACUGGCAGCAcCGGCCc -3'
miRNA:   3'- cGCgCGCGacGUGGCCGUCGU-GCCGG- -5'
17199 3' -62.9 NC_004333.2 + 935 0.73 0.105018
Target:  5'- aGCGUGCGCcgcgcuaugcguuUGCauggaaugcaauGCCGGCAGCuucCGGCg -3'
miRNA:   3'- -CGCGCGCG-------------ACG------------UGGCCGUCGu--GCCGg -5'
17199 3' -62.9 NC_004333.2 + 1144 0.67 0.26701
Target:  5'- cGCGCGaCGUUGCACugcauauccgaucgCGGCGGCuugcuucgGGUCu -3'
miRNA:   3'- -CGCGC-GCGACGUG--------------GCCGUCGug------CCGG- -5'
17199 3' -62.9 NC_004333.2 + 1174 0.69 0.183685
Target:  5'- cGCGCGCGaCUGCgacgugaACUuGCGGCACGugaugaaugucGCCa -3'
miRNA:   3'- -CGCGCGC-GACG-------UGGcCGUCGUGC-----------CGG- -5'
17199 3' -62.9 NC_004333.2 + 1355 0.67 0.26898
Target:  5'- uCGCGUaacGCaaccGCGCCaGGCGGCGC-GCCa -3'
miRNA:   3'- cGCGCG---CGa---CGUGG-CCGUCGUGcCGG- -5'
17199 3' -62.9 NC_004333.2 + 1925 0.68 0.231767
Target:  5'- aCGCGUcugcaccaGCUggcccGCACCGGCGaCGCgGGCCg -3'
miRNA:   3'- cGCGCG--------CGA-----CGUGGCCGUcGUG-CCGG- -5'
17199 3' -62.9 NC_004333.2 + 1986 0.66 0.321325
Target:  5'- uGCGaguucguaGCGUUaCGCCGGCGcggaugaugcccgacGuCACGGCCg -3'
miRNA:   3'- -CGCg-------CGCGAcGUGGCCGU---------------C-GUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 2316 0.68 0.231185
Target:  5'- cGCcCGCGUUGaACUGGCGgaaugcgagcaccGUGCGGCCg -3'
miRNA:   3'- -CGcGCGCGACgUGGCCGU-------------CGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 2431 0.69 0.183685
Target:  5'- cCGCGUcgaucaacuuccaGCUGCGCaaCGGCcGCACGGUg -3'
miRNA:   3'- cGCGCG-------------CGACGUG--GCCGuCGUGCCGg -5'
17199 3' -62.9 NC_004333.2 + 2683 0.75 0.073707
Target:  5'- uUGCaGCGUcGCGCCGGCGGCGgccgacaGGCCg -3'
miRNA:   3'- cGCG-CGCGaCGUGGCCGUCGUg------CCGG- -5'
17199 3' -62.9 NC_004333.2 + 2744 0.79 0.031796
Target:  5'- gGCGCGaCGCUGCaagcuGCCGGCGuuGCGGCUg -3'
miRNA:   3'- -CGCGC-GCGACG-----UGGCCGUcgUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 3026 0.68 0.219249
Target:  5'- aGCGCGCGaacuucagaucGUA-CGGCAGC-UGGCCg -3'
miRNA:   3'- -CGCGCGCga---------CGUgGCCGUCGuGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 3082 0.75 0.067264
Target:  5'- uCGCGCGCUacgucgcggcggacGCGCCGGCgAGCgucuACGGCa -3'
miRNA:   3'- cGCGCGCGA--------------CGUGGCCG-UCG----UGCCGg -5'
17199 3' -62.9 NC_004333.2 + 3275 0.71 0.137866
Target:  5'- gGCgGCGCGCcGgGCCGGCu-CAcCGGCCu -3'
miRNA:   3'- -CG-CGCGCGaCgUGGCCGucGU-GCCGG- -5'
17199 3' -62.9 NC_004333.2 + 3304 0.69 0.179441
Target:  5'- uUGUGCGC-GCGgCGGC-GCGCGGUUg -3'
miRNA:   3'- cGCGCGCGaCGUgGCCGuCGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 3541 0.68 0.214841
Target:  5'- aGCGgGaucaaCGCgGUGCCGcGCAGCGCgucGGCCg -3'
miRNA:   3'- -CGCgC-----GCGaCGUGGC-CGUCGUG---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.