Results 1 - 20 of 248 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17199 | 3' | -62.9 | NC_004333.2 | + | 39186 | 1.11 | 0.000106 |
Target: 5'- uGCGCGCGCUGCACCGGCAGCACGGCCc -3' miRNA: 3'- -CGCGCGCGACGUGGCCGUCGUGCCGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 30055 | 0.85 | 0.012431 |
Target: 5'- uGCuCGCGCUcgGCGCCgguGGCAGCGCGGCCg -3' miRNA: 3'- -CGcGCGCGA--CGUGG---CCGUCGUGCCGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 14051 | 0.82 | 0.018536 |
Target: 5'- aGCGCGCGCagcucgcgcGCACCGGCcGC-CGGCCu -3' miRNA: 3'- -CGCGCGCGa--------CGUGGCCGuCGuGCCGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 29922 | 0.82 | 0.020132 |
Target: 5'- cGCGCGCuucGCUGCgaacgaucagucgACUGGCGGCGCGGCg -3' miRNA: 3'- -CGCGCG---CGACG-------------UGGCCGUCGUGCCGg -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 4953 | 0.8 | 0.027911 |
Target: 5'- aGCGCGCGCUacauggucagcggcgGCAgCGGCaucGGCACGGCg -3' miRNA: 3'- -CGCGCGCGA---------------CGUgGCCG---UCGUGCCGg -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 33292 | 0.8 | 0.02839 |
Target: 5'- cGCGCGCGUUGCGUCGGCcGCAuCGaGCCa -3' miRNA: 3'- -CGCGCGCGACGUGGCCGuCGU-GC-CGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 22478 | 0.8 | 0.03126 |
Target: 5'- gGUGCGCGCaUGCGCCgcgaagccucgaccuGGCAG-ACGGCCa -3' miRNA: 3'- -CGCGCGCG-ACGUGG---------------CCGUCgUGCCGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 2744 | 0.79 | 0.031796 |
Target: 5'- gGCGCGaCGCUGCaagcuGCCGGCGuuGCGGCUg -3' miRNA: 3'- -CGCGC-GCGACG-----UGGCCGUcgUGCCGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 39333 | 0.79 | 0.036518 |
Target: 5'- cGCGCGCGCgUGCgccuGCCGGCcgcucggGGUGCGGUCg -3' miRNA: 3'- -CGCGCGCG-ACG----UGGCCG-------UCGUGCCGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 39243 | 0.79 | 0.038096 |
Target: 5'- aGCGCGCGCaGCACgGGCGGCAggaugucgucgagauCGGUg -3' miRNA: 3'- -CGCGCGCGaCGUGgCCGUCGU---------------GCCGg -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 20736 | 0.78 | 0.038746 |
Target: 5'- cGCGCGCGCUGCcggacaucGCCGacGCGGCuGCGcGCCu -3' miRNA: 3'- -CGCGCGCGACG--------UGGC--CGUCG-UGC-CGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 15256 | 0.78 | 0.038746 |
Target: 5'- aGCGCGaaaugaGCgacgauuugccgUGCugCGGCGGCGCGGUCa -3' miRNA: 3'- -CGCGCg-----CG------------ACGugGCCGUCGUGCCGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 32751 | 0.78 | 0.042163 |
Target: 5'- cGCGCagguCGCUGcCGCCGGCcauaAGCGCGGCa -3' miRNA: 3'- -CGCGc---GCGAC-GUGGCCG----UCGUGCCGg -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 18819 | 0.78 | 0.042163 |
Target: 5'- gGCGCGUGCUGCuaucgaagcccGCgCGGCAGUACGcaguuGCCg -3' miRNA: 3'- -CGCGCGCGACG-----------UG-GCCGUCGUGC-----CGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 13538 | 0.78 | 0.043366 |
Target: 5'- cGCG-GCGUUGcCGCCGGCGGC-CaGGCCg -3' miRNA: 3'- -CGCgCGCGAC-GUGGCCGUCGuG-CCGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 44380 | 0.78 | 0.044602 |
Target: 5'- -gGUGCGCUGC-UCGGCGGCGCGuGCg -3' miRNA: 3'- cgCGCGCGACGuGGCCGUCGUGC-CGg -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 45029 | 0.77 | 0.045873 |
Target: 5'- cCGCGCGUgGCGCUGGCGGCGCGcaaacGCUg -3' miRNA: 3'- cGCGCGCGaCGUGGCCGUCGUGC-----CGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 25410 | 0.77 | 0.045873 |
Target: 5'- aGCGCGC-CUGCagcguGCCGGCGGC--GGCCg -3' miRNA: 3'- -CGCGCGcGACG-----UGGCCGUCGugCCGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 23579 | 0.77 | 0.048116 |
Target: 5'- gGCGCgGUGCUGCAaagugccgacuuccUCGGCaacuggaucAGCGCGGCCg -3' miRNA: 3'- -CGCG-CGCGACGU--------------GGCCG---------UCGUGCCGG- -5' |
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17199 | 3' | -62.9 | NC_004333.2 | + | 19490 | 0.77 | 0.049902 |
Target: 5'- uGCGaucgGCGCUggcGCGCUGGCGGCGCucguGGCCg -3' miRNA: 3'- -CGCg---CGCGA---CGUGGCCGUCGUG----CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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