miRNA display CGI


Results 1 - 20 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17199 3' -62.9 NC_004333.2 + 39186 1.11 0.000106
Target:  5'- uGCGCGCGCUGCACCGGCAGCACGGCCc -3'
miRNA:   3'- -CGCGCGCGACGUGGCCGUCGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 14243 0.75 0.070512
Target:  5'- cGUGCGCGC-GCGCCucuuucgagccgagcGGCGGCAC-GCCu -3'
miRNA:   3'- -CGCGCGCGaCGUGG---------------CCGUCGUGcCGG- -5'
17199 3' -62.9 NC_004333.2 + 37365 0.75 0.073707
Target:  5'- aCGCGaCG-UGCACCGcGUcGCGCGGCCg -3'
miRNA:   3'- cGCGC-GCgACGUGGC-CGuCGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 45066 0.66 0.325888
Target:  5'- cGCGCG-GCcGCGCCcgGGCaAGaaaACGGCg -3'
miRNA:   3'- -CGCGCgCGaCGUGG--CCG-UCg--UGCCGg -5'
17199 3' -62.9 NC_004333.2 + 32751 0.78 0.042163
Target:  5'- cGCGCagguCGCUGcCGCCGGCcauaAGCGCGGCa -3'
miRNA:   3'- -CGCGc---GCGAC-GUGGCCG----UCGUGCCGg -5'
17199 3' -62.9 NC_004333.2 + 18819 0.78 0.042163
Target:  5'- gGCGCGUGCUGCuaucgaagcccGCgCGGCAGUACGcaguuGCCg -3'
miRNA:   3'- -CGCGCGCGACG-----------UG-GCCGUCGUGC-----CGG- -5'
17199 3' -62.9 NC_004333.2 + 44380 0.78 0.044602
Target:  5'- -gGUGCGCUGC-UCGGCGGCGCGuGCg -3'
miRNA:   3'- cgCGCGCGACGuGGCCGUCGUGC-CGg -5'
17199 3' -62.9 NC_004333.2 + 25410 0.77 0.045873
Target:  5'- aGCGCGC-CUGCagcguGCCGGCGGC--GGCCg -3'
miRNA:   3'- -CGCGCGcGACG-----UGGCCGUCGugCCGG- -5'
17199 3' -62.9 NC_004333.2 + 13879 0.76 0.055812
Target:  5'- cGCGcCGCGCgaagucggccgGCACgGGCuGCGCGGCg -3'
miRNA:   3'- -CGC-GCGCGa----------CGUGgCCGuCGUGCCGg -5'
17199 3' -62.9 NC_004333.2 + 47958 0.75 0.067826
Target:  5'- -gGCGCGCUGgucgucggcguCAUCGGCGGUguGCGGCUg -3'
miRNA:   3'- cgCGCGCGAC-----------GUGGCCGUCG--UGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 38379 0.76 0.059017
Target:  5'- uCGCGUGUcgggUGCGCCGGCGugacGC-CGGCCa -3'
miRNA:   3'- cGCGCGCG----ACGUGGCCGU----CGuGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 19490 0.77 0.049902
Target:  5'- uGCGaucgGCGCUggcGCGCUGGCGGCGCucguGGCCg -3'
miRNA:   3'- -CGCg---CGCGA---CGUGGCCGUCGUG----CCGG- -5'
17199 3' -62.9 NC_004333.2 + 33292 0.8 0.02839
Target:  5'- cGCGCGCGUUGCGUCGGCcGCAuCGaGCCa -3'
miRNA:   3'- -CGCGCGCGACGUGGCCGuCGU-GC-CGG- -5'
17199 3' -62.9 NC_004333.2 + 46942 0.75 0.06416
Target:  5'- uCGCGCGCaGCcaaGGCGGCGCGcGCCg -3'
miRNA:   3'- cGCGCGCGaCGuggCCGUCGUGC-CGG- -5'
17199 3' -62.9 NC_004333.2 + 15256 0.78 0.038746
Target:  5'- aGCGCGaaaugaGCgacgauuugccgUGCugCGGCGGCGCGGUCa -3'
miRNA:   3'- -CGCGCg-----CG------------ACGugGCCGUCGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 45029 0.77 0.045873
Target:  5'- cCGCGCGUgGCGCUGGCGGCGCGcaaacGCUg -3'
miRNA:   3'- cGCGCGCGaCGUGGCCGUCGUGC-----CGG- -5'
17199 3' -62.9 NC_004333.2 + 46347 0.75 0.065969
Target:  5'- gGCGCcguuauGCGCcGCugCGGauuuGGCGCGGCCu -3'
miRNA:   3'- -CGCG------CGCGaCGugGCCg---UCGUGCCGG- -5'
17199 3' -62.9 NC_004333.2 + 25937 0.75 0.073707
Target:  5'- uUGCGCGCgGCgcgauGCCGGCGGCcaguacGCGGCg -3'
miRNA:   3'- cGCGCGCGaCG-----UGGCCGUCG------UGCCGg -5'
17199 3' -62.9 NC_004333.2 + 20736 0.78 0.038746
Target:  5'- cGCGCGCGCUGCcggacaucGCCGacGCGGCuGCGcGCCu -3'
miRNA:   3'- -CGCGCGCGACG--------UGGC--CGUCG-UGC-CGG- -5'
17199 3' -62.9 NC_004333.2 + 13538 0.78 0.043366
Target:  5'- cGCG-GCGUUGcCGCCGGCGGC-CaGGCCg -3'
miRNA:   3'- -CGCgCGCGAC-GUGGCCGUCGuG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.