miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17199 5' -57.1 NC_004333.2 + 33282 0.66 0.58473
Target:  5'- uUCaGCCGAGC-GCGcGCGuUGCgUCGGc -3'
miRNA:   3'- -AGcCGGCUCGaCGCaCGUuACG-AGCU- -5'
17199 5' -57.1 NC_004333.2 + 14260 0.66 0.58473
Target:  5'- uUCGaGCCGAGCgGCG-GCAc-GCcuUCGAg -3'
miRNA:   3'- -AGC-CGGCUCGaCGCaCGUuaCG--AGCU- -5'
17199 5' -57.1 NC_004333.2 + 14744 0.66 0.569425
Target:  5'- cUCGGCCGAcaaGCUGCGcGaAAUGCgccgcaacaucagCGAa -3'
miRNA:   3'- -AGCCGGCU---CGACGCaCgUUACGa------------GCU- -5'
17199 5' -57.1 NC_004333.2 + 43304 0.66 0.562896
Target:  5'- gCGGCgCGGGCaUGCGaacGCAcgGCaCGAg -3'
miRNA:   3'- aGCCG-GCUCG-ACGCa--CGUuaCGaGCU- -5'
17199 5' -57.1 NC_004333.2 + 10009 0.66 0.552059
Target:  5'- gUCGGCCGu-CUGCGcGacGUGCUUGAu -3'
miRNA:   3'- -AGCCGGCucGACGCaCguUACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 16586 0.66 0.541286
Target:  5'- gCGGcCCGAGaaagagaGUGUGgAAUGUUCGAc -3'
miRNA:   3'- aGCC-GGCUCga-----CGCACgUUACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 45091 0.66 0.541286
Target:  5'- aCGGCgGA-CUGCGagGCGAUaCUCGAc -3'
miRNA:   3'- aGCCGgCUcGACGCa-CGUUAcGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 12193 0.66 0.541286
Target:  5'- aCGG-CGAGCU-CGUGCc--GCUCGGu -3'
miRNA:   3'- aGCCgGCUCGAcGCACGuuaCGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 41501 0.66 0.538067
Target:  5'- cCGcGUCGAGCaGCGccuguucgaucaugUGCGcGUGCUCGAu -3'
miRNA:   3'- aGC-CGGCUCGaCGC--------------ACGU-UACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 39261 0.66 0.530584
Target:  5'- -gGGCCGuGCUGCcgGUGCAGcGCgCGc -3'
miRNA:   3'- agCCGGCuCGACG--CACGUUaCGaGCu -5'
17199 5' -57.1 NC_004333.2 + 17473 0.66 0.530584
Target:  5'- gUCGuGaCCGcGCUGCGcgagcagcucgaUGCGcUGCUCGAc -3'
miRNA:   3'- -AGC-C-GGCuCGACGC------------ACGUuACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 29121 0.66 0.530584
Target:  5'- cUCGGCgCGAucGUggGCGgcGCGGUGCUCGc -3'
miRNA:   3'- -AGCCG-GCU--CGa-CGCa-CGUUACGAGCu -5'
17199 5' -57.1 NC_004333.2 + 26616 0.66 0.530584
Target:  5'- cCGGCgCGGGCUcCGUGCA--GUUCGc -3'
miRNA:   3'- aGCCG-GCUCGAcGCACGUuaCGAGCu -5'
17199 5' -57.1 NC_004333.2 + 18809 0.67 0.509421
Target:  5'- gCGGCCGcagGGC-GCGUGC--UGCuaUCGAa -3'
miRNA:   3'- aGCCGGC---UCGaCGCACGuuACG--AGCU- -5'
17199 5' -57.1 NC_004333.2 + 41893 0.67 0.488621
Target:  5'- gCGGCCGGGCgccGuCGUGCcGUcgggcaGCUUGAc -3'
miRNA:   3'- aGCCGGCUCGa--C-GCACGuUA------CGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 42754 0.67 0.4743
Target:  5'- gUCGGCCG-GCguggagacgaucgGCGcuguUGCGGgcUGCUCGAc -3'
miRNA:   3'- -AGCCGGCuCGa------------CGC----ACGUU--ACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 42029 0.68 0.458196
Target:  5'- gCGGCCaacGAGCgggGCGUGCuc-GC-CGAa -3'
miRNA:   3'- aGCCGG---CUCGa--CGCACGuuaCGaGCU- -5'
17199 5' -57.1 NC_004333.2 + 37571 0.68 0.458196
Target:  5'- gUGGCCGuGGCcgGCG-GCccauUGCUCGAu -3'
miRNA:   3'- aGCCGGC-UCGa-CGCaCGuu--ACGAGCU- -5'
17199 5' -57.1 NC_004333.2 + 41308 0.69 0.409853
Target:  5'- -aGGCCGAGCUcgcccgGCGcGCGAUGgaCGu -3'
miRNA:   3'- agCCGGCUCGA------CGCaCGUUACgaGCu -5'
17199 5' -57.1 NC_004333.2 + 4971 0.69 0.391423
Target:  5'- aUGGCCGAGCcuUGCG-GCAG-GCauauUCGAa -3'
miRNA:   3'- aGCCGGCUCG--ACGCaCGUUaCG----AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.