Results 1 - 20 of 102 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17204 | 3' | -55 | NC_004333.2 | + | 6372 | 0.65 | 0.699612 |
Target: 5'- cGCAGCcuuucACCaGCGCGcUCGUU-GCGUCa -3' miRNA: 3'- uCGUUG-----UGGcCGUGU-AGCAGuCGCAG- -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 18325 | 0.65 | 0.699612 |
Target: 5'- uGCAGgguuCugCGGauuaGCAgcgugcCGUCGGCGUCg -3' miRNA: 3'- uCGUU----GugGCCg---UGUa-----GCAGUCGCAG- -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 8780 | 0.66 | 0.688564 |
Target: 5'- uGGCGAaguCGCCGGCAaugccuugCGcCGGCGUg -3' miRNA: 3'- -UCGUU---GUGGCCGUgua-----GCaGUCGCAg -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 15299 | 0.66 | 0.688564 |
Target: 5'- cAGCAucaGCACCgGGCGCuugcCGUCgAGCagGUCg -3' miRNA: 3'- -UCGU---UGUGG-CCGUGua--GCAG-UCG--CAG- -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 30633 | 0.66 | 0.688564 |
Target: 5'- cAGCAGCG-CGGCAaggCG-CGGCGUg -3' miRNA: 3'- -UCGUUGUgGCCGUguaGCaGUCGCAg -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 28537 | 0.66 | 0.688564 |
Target: 5'- uGCGACugUGGCGCG-CGUaacuGGCGg- -3' miRNA: 3'- uCGUUGugGCCGUGUaGCAg---UCGCag -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 37433 | 0.66 | 0.688564 |
Target: 5'- cGCGACGCgGuGCACGUCGcgUAGCc-- -3' miRNA: 3'- uCGUUGUGgC-CGUGUAGCa-GUCGcag -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 29130 | 0.66 | 0.688564 |
Target: 5'- aAGCGcCAacUCGGCGCgAUCGUgGGCGg- -3' miRNA: 3'- -UCGUuGU--GGCCGUG-UAGCAgUCGCag -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 6677 | 0.66 | 0.688564 |
Target: 5'- uGCGACugCGGCGCuggg-CGGCG-Cg -3' miRNA: 3'- uCGUUGugGCCGUGuagcaGUCGCaG- -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 5077 | 0.66 | 0.688564 |
Target: 5'- cGCGACGgaaGGCACcgUGUCGuCGUCg -3' miRNA: 3'- uCGUUGUgg-CCGUGuaGCAGUcGCAG- -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 28316 | 0.66 | 0.688564 |
Target: 5'- cAGgAGCGCCGcGCGCG-CGUCAcgGUCa -3' miRNA: 3'- -UCgUUGUGGC-CGUGUaGCAGUcgCAG- -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 13832 | 0.66 | 0.688564 |
Target: 5'- cGGCGACgguucgacgACgGGCGCcgCGUCgAGCG-Ca -3' miRNA: 3'- -UCGUUG---------UGgCCGUGuaGCAG-UCGCaG- -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 19545 | 0.66 | 0.67746 |
Target: 5'- aAGCugaugGGCGCCGGuCGCAcgGUCGGCG-Cg -3' miRNA: 3'- -UCG-----UUGUGGCC-GUGUagCAGUCGCaG- -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 39200 | 0.66 | 0.67746 |
Target: 5'- cGGCAGCACgGcccGCGCAUccCGUCGGCc-- -3' miRNA: 3'- -UCGUUGUGgC---CGUGUA--GCAGUCGcag -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 38629 | 0.66 | 0.67746 |
Target: 5'- cAGCAGCugugucguuGCCGugaGCGCGUCGgacggCAacGCGUCg -3' miRNA: 3'- -UCGUUG---------UGGC---CGUGUAGCa----GU--CGCAG- -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 46356 | 0.66 | 0.67746 |
Target: 5'- cGGCGAUAUCGuGCcaGUUGUCGGUGUa -3' miRNA: 3'- -UCGUUGUGGC-CGugUAGCAGUCGCAg -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 47564 | 0.66 | 0.66631 |
Target: 5'- cGCGccgGCCGGCGCcUCGuUCAGCGn- -3' miRNA: 3'- uCGUug-UGGCCGUGuAGC-AGUCGCag -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 8849 | 0.66 | 0.66631 |
Target: 5'- aGGCAuuGCCGGCGacuUCGcCAGC-UCg -3' miRNA: 3'- -UCGUugUGGCCGUgu-AGCaGUCGcAG- -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 44574 | 0.66 | 0.66631 |
Target: 5'- -uCGACACCGaCGCgAUgGUCGGCGUg -3' miRNA: 3'- ucGUUGUGGCcGUG-UAgCAGUCGCAg -5' |
|||||||
17204 | 3' | -55 | NC_004333.2 | + | 7335 | 0.66 | 0.66631 |
Target: 5'- cGCAGagAUCGGCGucuaAUCGUCAgGCGUUg -3' miRNA: 3'- uCGUUg-UGGCCGUg---UAGCAGU-CGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home