Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17208 | 3' | -53.8 | NC_004333.2 | + | 18481 | 0.69 | 0.623028 |
Target: 5'- gCCGAucGCGaGGCGuuGCGCuUCG-GACg -3' miRNA: 3'- -GGCU--UGCaCUGCggCGUGuAGCuCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 13851 | 0.67 | 0.710972 |
Target: 5'- gUGGACGUGAgcaacuacaCGCCGCGCGagCGGcGCg -3' miRNA: 3'- gGCUUGCACU---------GCGGCGUGUa-GCUcUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 41764 | 0.67 | 0.710972 |
Target: 5'- cCCGAAguUGcCGCC-CGCGUCGAGcACg -3' miRNA: 3'- -GGCUUgcACuGCGGcGUGUAGCUC-UG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 26914 | 0.68 | 0.700135 |
Target: 5'- gCCGAGCGcGACGCgacaGCAC-UCGcuacGACg -3' miRNA: 3'- -GGCUUGCaCUGCGg---CGUGuAGCu---CUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 46283 | 0.68 | 0.689231 |
Target: 5'- uUCGAGCGccUGGCGCUGauccgGCG-CGAGACc -3' miRNA: 3'- -GGCUUGC--ACUGCGGCg----UGUaGCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 9427 | 0.68 | 0.656232 |
Target: 5'- -aGAAgGcccGACGCCGCGCGcCGAcGACg -3' miRNA: 3'- ggCUUgCa--CUGCGGCGUGUaGCU-CUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 18167 | 0.69 | 0.634101 |
Target: 5'- cCCGAAUGcgGACGUgGCGCGcUCGcAGAg -3' miRNA: 3'- -GGCUUGCa-CUGCGgCGUGU-AGC-UCUg -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 21008 | 0.69 | 0.634101 |
Target: 5'- cCCGuGGCGUaGcCGCCGgGCGUCGGGuuGCa -3' miRNA: 3'- -GGC-UUGCA-CuGCGGCgUGUAGCUC--UG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 4059 | 0.69 | 0.634101 |
Target: 5'- aCGcAGCagcuaaACGCCGCcaACAUCGAGACg -3' miRNA: 3'- gGC-UUGcac---UGCGGCG--UGUAGCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 21774 | 0.67 | 0.72173 |
Target: 5'- gCGcACGUG-CGCauagaGCGCGUCGAGcuGCu -3' miRNA: 3'- gGCuUGCACuGCGg----CGUGUAGCUC--UG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 31314 | 0.67 | 0.72173 |
Target: 5'- aCCGAGac-GGCGCUGCGCcgCGcGGCc -3' miRNA: 3'- -GGCUUgcaCUGCGGCGUGuaGCuCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 31392 | 0.67 | 0.732398 |
Target: 5'- gCCGGcauuGCG-GGCGCCGUgcucgGCGUCGGcGCa -3' miRNA: 3'- -GGCU----UGCaCUGCGGCG-----UGUAGCUcUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 3029 | 0.66 | 0.773936 |
Target: 5'- aCGGGCGUcACGCuCGCGCAgcugCaGGGCu -3' miRNA: 3'- gGCUUGCAcUGCG-GCGUGUa---GcUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 45796 | 0.66 | 0.773936 |
Target: 5'- aUCGGcACGUucGCGCCGgGC-UCGAGAUg -3' miRNA: 3'- -GGCU-UGCAc-UGCGGCgUGuAGCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 13605 | 0.66 | 0.773936 |
Target: 5'- gCCGccGGCGgcaACGCCGCgagcACGUCG-GACg -3' miRNA: 3'- -GGC--UUGCac-UGCGGCG----UGUAGCuCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 332 | 0.67 | 0.753417 |
Target: 5'- cUCGGcgGCGUGACGaC-CACAUCGAacGGCa -3' miRNA: 3'- -GGCU--UGCACUGCgGcGUGUAGCU--CUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 9337 | 0.67 | 0.753417 |
Target: 5'- gCCGAAUccGcagaaggcuAUGCCGCACGcggCGAGGCg -3' miRNA: 3'- -GGCUUGcaC---------UGCGGCGUGUa--GCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 44245 | 0.67 | 0.752377 |
Target: 5'- gCgGAACGUGaaacaguaggcgcGCGUCGUcggauCGUCGAGAUa -3' miRNA: 3'- -GgCUUGCAC-------------UGCGGCGu----GUAGCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 43483 | 0.67 | 0.742964 |
Target: 5'- cCCGAGCGUc-UGCCuGCGCGggcggcugCGGGACc -3' miRNA: 3'- -GGCUUGCAcuGCGG-CGUGUa-------GCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 17113 | 0.67 | 0.736637 |
Target: 5'- gCGAGCaUGACGCCauuggccugcagcguGCACGagUCGAGcGCg -3' miRNA: 3'- gGCUUGcACUGCGG---------------CGUGU--AGCUC-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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