miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17210 5' -56 NC_004333.2 + 31362 0.66 0.642837
Target:  5'- gGCGCagGUGCGGCCGGucuCGCCGg--- -3'
miRNA:   3'- gCGUGa-CGCGCUGGUUu--GCGGUgcau -5'
17210 5' -56 NC_004333.2 + 30690 0.66 0.620582
Target:  5'- cCGCGCUGCugcaCGACCuGGCGUC-CGg- -3'
miRNA:   3'- -GCGUGACGc---GCUGGuUUGCGGuGCau -5'
17210 5' -56 NC_004333.2 + 3673 0.66 0.609464
Target:  5'- gCGCccgACUGgGCGAauaCGAuCGCCGCGa- -3'
miRNA:   3'- -GCG---UGACgCGCUg--GUUuGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 13937 0.66 0.598368
Target:  5'- uCGCGCgGCGCGGCgCGcucaaugcgcucGACGCgGCGc- -3'
miRNA:   3'- -GCGUGaCGCGCUG-GU------------UUGCGgUGCau -5'
17210 5' -56 NC_004333.2 + 20641 0.66 0.598368
Target:  5'- -cCACgGCGCGACCcgacGCGCCgACGa- -3'
miRNA:   3'- gcGUGaCGCGCUGGuu--UGCGG-UGCau -5'
17210 5' -56 NC_004333.2 + 26464 0.66 0.598368
Target:  5'- cCGCGCUGCa--GCCAAGCGCuauCACGa- -3'
miRNA:   3'- -GCGUGACGcgcUGGUUUGCG---GUGCau -5'
17210 5' -56 NC_004333.2 + 37229 0.66 0.5873
Target:  5'- cCGCGCUGCGgGauGCCGcACGUgauCGCGUc -3'
miRNA:   3'- -GCGUGACGCgC--UGGUuUGCG---GUGCAu -5'
17210 5' -56 NC_004333.2 + 13902 0.66 0.583987
Target:  5'- aCGgGCUGCGCGGCgGcugccguggcgaucGugGCCGCu-- -3'
miRNA:   3'- -GCgUGACGCGCUGgU--------------UugCGGUGcau -5'
17210 5' -56 NC_004333.2 + 19722 0.66 0.5873
Target:  5'- gGCGCUGgugGCGugCAAgacgGCGCCGCu-- -3'
miRNA:   3'- gCGUGACg--CGCugGUU----UGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 6718 0.66 0.620582
Target:  5'- gCGCGCcgaGCGCGcuGCCGAGCGCgAuCGa- -3'
miRNA:   3'- -GCGUGa--CGCGC--UGGUUUGCGgU-GCau -5'
17210 5' -56 NC_004333.2 + 19295 0.66 0.620582
Target:  5'- cCGUAUUGCucgaGCGccguGCgGAACGCCGCGa- -3'
miRNA:   3'- -GCGUGACG----CGC----UGgUUUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 12382 0.66 0.620582
Target:  5'- cCGCGCgaggcugGCGCG-CaGGACGCCGCa-- -3'
miRNA:   3'- -GCGUGa------CGCGCuGgUUUGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 41203 0.66 0.642837
Target:  5'- cCGCACUGCGUGAgCgGAACgGCCu---- -3'
miRNA:   3'- -GCGUGACGCGCU-GgUUUG-CGGugcau -5'
17210 5' -56 NC_004333.2 + 48175 0.66 0.642837
Target:  5'- gCGCGgUGCGCGcgcccgguuGCCGccuGCGCCuCGUc -3'
miRNA:   3'- -GCGUgACGCGC---------UGGUu--UGCGGuGCAu -5'
17210 5' -56 NC_004333.2 + 5041 0.66 0.642837
Target:  5'- uGCGCUGCcgcaaggcuCGGCCAuuGCGcCCugGUAc -3'
miRNA:   3'- gCGUGACGc--------GCUGGUu-UGC-GGugCAU- -5'
17210 5' -56 NC_004333.2 + 37381 0.66 0.641725
Target:  5'- aGCACcGcCGCGACCGAcuggaacGCGUCGCc-- -3'
miRNA:   3'- gCGUGaC-GCGCUGGUU-------UGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 8235 0.66 0.631709
Target:  5'- aCGCGaugGaCGCGGCCGAccuguCGCCACa-- -3'
miRNA:   3'- -GCGUga-C-GCGCUGGUUu----GCGGUGcau -5'
17210 5' -56 NC_004333.2 + 10971 0.66 0.631709
Target:  5'- aCGCACUGuCGuCGGCgCAAgugacugucGCGCCgGCGUu -3'
miRNA:   3'- -GCGUGAC-GC-GCUG-GUU---------UGCGG-UGCAu -5'
17210 5' -56 NC_004333.2 + 37443 0.66 0.631709
Target:  5'- aGgACggccGCGCGACgCGGugcACGUCGCGUAg -3'
miRNA:   3'- gCgUGa---CGCGCUG-GUU---UGCGGUGCAU- -5'
17210 5' -56 NC_004333.2 + 43463 0.66 0.631709
Target:  5'- gGCgGCUGCGgGACCAuAGCGauugCGCGUu -3'
miRNA:   3'- gCG-UGACGCgCUGGU-UUGCg---GUGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.