miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17210 5' -56 NC_004333.2 + 118 0.67 0.532704
Target:  5'- gGUACgaagGCGCG-CUAGACuuGCCGCGUc -3'
miRNA:   3'- gCGUGa---CGCGCuGGUUUG--CGGUGCAu -5'
17210 5' -56 NC_004333.2 + 1002 0.69 0.449678
Target:  5'- aCGCAUaGCGCGGCgc-ACGCUACGa- -3'
miRNA:   3'- -GCGUGaCGCGCUGguuUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 1660 0.68 0.480035
Target:  5'- uGCGCUGCGCGGUCGgaaacAGCGCUuccguCGUGc -3'
miRNA:   3'- gCGUGACGCGCUGGU-----UUGCGGu----GCAU- -5'
17210 5' -56 NC_004333.2 + 2448 0.7 0.383234
Target:  5'- gCGCGgcgaacacCUGCGCG-CCGAACgaaGCCGCGUu -3'
miRNA:   3'- -GCGU--------GACGCGCuGGUUUG---CGGUGCAu -5'
17210 5' -56 NC_004333.2 + 2479 0.68 0.490375
Target:  5'- uGcCGCUGUacgGCGACCAGGCGaCCGCc-- -3'
miRNA:   3'- gC-GUGACG---CGCUGGUUUGC-GGUGcau -5'
17210 5' -56 NC_004333.2 + 2496 0.66 0.620582
Target:  5'- uCGaCGCUGCcucgaGAUCGGGCGCgACGUAc -3'
miRNA:   3'- -GC-GUGACGcg---CUGGUUUGCGgUGCAU- -5'
17210 5' -56 NC_004333.2 + 2957 0.71 0.348309
Target:  5'- uGCAgCUGCGCGAgCGuGACGCC-CGUc -3'
miRNA:   3'- gCGU-GACGCGCUgGU-UUGCGGuGCAu -5'
17210 5' -56 NC_004333.2 + 3559 0.7 0.374288
Target:  5'- cCGCGCaGCGCGucgGCCGAccacauaguGCGCCACa-- -3'
miRNA:   3'- -GCGUGaCGCGC---UGGUU---------UGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 3618 0.7 0.383234
Target:  5'- aCGCGCUGCGCGGCa-----CCGCGUu -3'
miRNA:   3'- -GCGUGACGCGCUGguuugcGGUGCAu -5'
17210 5' -56 NC_004333.2 + 3673 0.66 0.609464
Target:  5'- gCGCccgACUGgGCGAauaCGAuCGCCGCGa- -3'
miRNA:   3'- -GCG---UGACgCGCUg--GUUuGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 3865 0.71 0.356824
Target:  5'- gCGUccGCUGCGCagaucgcgaaGGCCGAucagaACGCCACGUc -3'
miRNA:   3'- -GCG--UGACGCG----------CUGGUU-----UGCGGUGCAu -5'
17210 5' -56 NC_004333.2 + 4043 0.66 0.630596
Target:  5'- uCGagaaACUGCGUGAuauaccaCCAGcCGCCGCGa- -3'
miRNA:   3'- -GCg---UGACGCGCU-------GGUUuGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 4346 0.69 0.420409
Target:  5'- gGCACgauguUGUGuCGACCGGGCGCacgaACGUGc -3'
miRNA:   3'- gCGUG-----ACGC-GCUGGUUUGCGg---UGCAU- -5'
17210 5' -56 NC_004333.2 + 5041 0.66 0.642837
Target:  5'- uGCGCUGCcgcaaggcuCGGCCAuuGCGcCCugGUAc -3'
miRNA:   3'- gCGUGACGc--------GCUGGUu-UGC-GGugCAU- -5'
17210 5' -56 NC_004333.2 + 5386 0.74 0.231937
Target:  5'- aGCGCgaagGCGCGAaagacCCGAACGCCGaGUAa -3'
miRNA:   3'- gCGUGa---CGCGCU-----GGUUUGCGGUgCAU- -5'
17210 5' -56 NC_004333.2 + 5617 0.67 0.554361
Target:  5'- uGCACU-CGCG-CCAAGCcgucgccgGCCACGg- -3'
miRNA:   3'- gCGUGAcGCGCuGGUUUG--------CGGUGCau -5'
17210 5' -56 NC_004333.2 + 6341 0.66 0.5873
Target:  5'- cCGCACcGCGCGAUUuuacgauGCGCCG-GUAu -3'
miRNA:   3'- -GCGUGaCGCGCUGGuu-----UGCGGUgCAU- -5'
17210 5' -56 NC_004333.2 + 6597 0.68 0.500818
Target:  5'- cCGcCACgGCGCGccGCCcAGCGCCGCa-- -3'
miRNA:   3'- -GC-GUGaCGCGC--UGGuUUGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 6668 0.67 0.57627
Target:  5'- gGCGCUGgGCGGCgCGccGugGCgGCGa- -3'
miRNA:   3'- gCGUGACgCGCUG-GU--UugCGgUGCau -5'
17210 5' -56 NC_004333.2 + 6718 0.66 0.620582
Target:  5'- gCGCGCcgaGCGCGcuGCCGAGCGCgAuCGa- -3'
miRNA:   3'- -GCGUGa--CGCGC--UGGUUUGCGgU-GCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.