miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17210 5' -56 NC_004333.2 + 43900 0.94 0.008104
Target:  5'- uCGCACUGCGCGA-CAAACGCCACGUAg -3'
miRNA:   3'- -GCGUGACGCGCUgGUUUGCGGUGCAU- -5'
17210 5' -56 NC_004333.2 + 21097 0.82 0.059898
Target:  5'- aGCACUGCGCGGCCAcuucguCGCC-CGUGa -3'
miRNA:   3'- gCGUGACGCGCUGGUuu----GCGGuGCAU- -5'
17210 5' -56 NC_004333.2 + 29892 0.8 0.09266
Target:  5'- aGCGCUGCGCGAUCGGGcCGCgCGCGg- -3'
miRNA:   3'- gCGUGACGCGCUGGUUU-GCG-GUGCau -5'
17210 5' -56 NC_004333.2 + 25877 0.79 0.106954
Target:  5'- aGCGCuuggUGCGCGagcGCCAAGCGCCGCGc- -3'
miRNA:   3'- gCGUG----ACGCGC---UGGUUUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 24296 0.78 0.113233
Target:  5'- gGCgACUGCGCGACCugGAACaGCCGCGa- -3'
miRNA:   3'- gCG-UGACGCGCUGG--UUUG-CGGUGCau -5'
17210 5' -56 NC_004333.2 + 38176 0.78 0.113233
Target:  5'- aGC-UUGUGCGACCAGAUGCCGgGUAa -3'
miRNA:   3'- gCGuGACGCGCUGGUUUGCGGUgCAU- -5'
17210 5' -56 NC_004333.2 + 36095 0.78 0.1165
Target:  5'- gGCGCUGCGCG-CCA---GCCACGUAc -3'
miRNA:   3'- gCGUGACGCGCuGGUuugCGGUGCAU- -5'
17210 5' -56 NC_004333.2 + 42093 0.75 0.192265
Target:  5'- uCGUGCUGCGCGACgAGGCGUguCGCGa- -3'
miRNA:   3'- -GCGUGACGCGCUGgUUUGCG--GUGCau -5'
17210 5' -56 NC_004333.2 + 17466 0.74 0.225874
Target:  5'- cCGCGCUGCGCGAgCAGcucgauGCGCUGCu-- -3'
miRNA:   3'- -GCGUGACGCGCUgGUU------UGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 5386 0.74 0.231937
Target:  5'- aGCGCgaagGCGCGAaagacCCGAACGCCGaGUAa -3'
miRNA:   3'- gCGUGa---CGCGCU-----GGUUUGCGGUgCAU- -5'
17210 5' -56 NC_004333.2 + 38297 0.73 0.238138
Target:  5'- uGCAC-GCGCGACCGugcACGCgGCGa- -3'
miRNA:   3'- gCGUGaCGCGCUGGUu--UGCGgUGCau -5'
17210 5' -56 NC_004333.2 + 36132 0.73 0.238138
Target:  5'- gGC-CUGCGCGACCGgcgcaaccuucAACGCCucguugACGUAg -3'
miRNA:   3'- gCGuGACGCGCUGGU-----------UUGCGG------UGCAU- -5'
17210 5' -56 NC_004333.2 + 33418 0.73 0.244476
Target:  5'- aGCgACUGCGCG-CCGAACcguaGCCGCGa- -3'
miRNA:   3'- gCG-UGACGCGCuGGUUUG----CGGUGCau -5'
17210 5' -56 NC_004333.2 + 41899 0.73 0.264333
Target:  5'- -cCGCU-CGCGGCCGGGCGCCGuCGUGc -3'
miRNA:   3'- gcGUGAcGCGCUGGUUUGCGGU-GCAU- -5'
17210 5' -56 NC_004333.2 + 28749 0.72 0.278285
Target:  5'- aGCaACUGCGCGA----GCGCCGCGUc -3'
miRNA:   3'- gCG-UGACGCGCUgguuUGCGGUGCAu -5'
17210 5' -56 NC_004333.2 + 12453 0.72 0.278285
Target:  5'- gCGCGCcgggcgggGCGCGGgCGGGCGCUACGg- -3'
miRNA:   3'- -GCGUGa-------CGCGCUgGUUUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 11725 0.72 0.285478
Target:  5'- gCGC-CUGCGCGACUAcuggcAGCGCUACu-- -3'
miRNA:   3'- -GCGuGACGCGCUGGU-----UUGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 38371 0.72 0.307936
Target:  5'- aCGCGCUGuCGCGugUcggguGCGCCgGCGUGa -3'
miRNA:   3'- -GCGUGAC-GCGCugGuu---UGCGG-UGCAU- -5'
17210 5' -56 NC_004333.2 + 31301 0.71 0.323644
Target:  5'- uGCGCcGCGCGGCCGucGCGCCGg--- -3'
miRNA:   3'- gCGUGaCGCGCUGGUu-UGCGGUgcau -5'
17210 5' -56 NC_004333.2 + 25944 0.71 0.331718
Target:  5'- gGCGCUcGCGC-ACCAAGCGCUGCu-- -3'
miRNA:   3'- gCGUGA-CGCGcUGGUUUGCGGUGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.