miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17210 5' -56 NC_004333.2 + 43900 0.94 0.008104
Target:  5'- uCGCACUGCGCGA-CAAACGCCACGUAg -3'
miRNA:   3'- -GCGUGACGCGCUgGUUUGCGGUGCAU- -5'
17210 5' -56 NC_004333.2 + 46475 0.7 0.365484
Target:  5'- aCGUACUGCGCGACUAuuacaAAgGCUGCa-- -3'
miRNA:   3'- -GCGUGACGCGCUGGU-----UUgCGGUGcau -5'
17210 5' -56 NC_004333.2 + 27426 0.7 0.383234
Target:  5'- uGCGCgGCGacggcuguCGACCAGGCGCCAUucggGUAg -3'
miRNA:   3'- gCGUGaCGC--------GCUGGUUUGCGGUG----CAU- -5'
17210 5' -56 NC_004333.2 + 37171 0.66 0.642837
Target:  5'- cCGCA--GCGCGGCgAcACGCCGCu-- -3'
miRNA:   3'- -GCGUgaCGCGCUGgUuUGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 36095 0.78 0.1165
Target:  5'- gGCGCUGCGCG-CCA---GCCACGUAc -3'
miRNA:   3'- gCGUGACGCGCuGGUuugCGGUGCAU- -5'
17210 5' -56 NC_004333.2 + 42093 0.75 0.192265
Target:  5'- uCGUGCUGCGCGACgAGGCGUguCGCGa- -3'
miRNA:   3'- -GCGUGACGCGCUGgUUUGCG--GUGCau -5'
17210 5' -56 NC_004333.2 + 38297 0.73 0.238138
Target:  5'- uGCAC-GCGCGACCGugcACGCgGCGa- -3'
miRNA:   3'- gCGUGaCGCGCUGGUu--UGCGgUGCau -5'
17210 5' -56 NC_004333.2 + 33418 0.73 0.244476
Target:  5'- aGCgACUGCGCG-CCGAACcguaGCCGCGa- -3'
miRNA:   3'- gCG-UGACGCGCuGGUUUG----CGGUGCau -5'
17210 5' -56 NC_004333.2 + 13423 0.71 0.331718
Target:  5'- gGUGC-GCGCGGCCGAACGCCugaucauggaugACGg- -3'
miRNA:   3'- gCGUGaCGCGCUGGUUUGCGG------------UGCau -5'
17210 5' -56 NC_004333.2 + 32810 0.71 0.356824
Target:  5'- aGCGgUuCGCGAUCAgucaggAACGCCACGUGc -3'
miRNA:   3'- gCGUgAcGCGCUGGU------UUGCGGUGCAU- -5'
17210 5' -56 NC_004333.2 + 19864 0.71 0.331718
Target:  5'- gGCGCgaGUGCGACCGAuuACGcCCGCGc- -3'
miRNA:   3'- gCGUGa-CGCGCUGGUU--UGC-GGUGCau -5'
17210 5' -56 NC_004333.2 + 38371 0.72 0.307936
Target:  5'- aCGCGCUGuCGCGugUcggguGCGCCgGCGUGa -3'
miRNA:   3'- -GCGUGAC-GCGCugGuu---UGCGG-UGCAU- -5'
17210 5' -56 NC_004333.2 + 29892 0.8 0.09266
Target:  5'- aGCGCUGCGCGAUCGGGcCGCgCGCGg- -3'
miRNA:   3'- gCGUGACGCGCUGGUUU-GCG-GUGCau -5'
17210 5' -56 NC_004333.2 + 2957 0.71 0.348309
Target:  5'- uGCAgCUGCGCGAgCGuGACGCC-CGUc -3'
miRNA:   3'- gCGU-GACGCGCUgGU-UUGCGGuGCAu -5'
17210 5' -56 NC_004333.2 + 25877 0.79 0.106954
Target:  5'- aGCGCuuggUGCGCGagcGCCAAGCGCCGCGc- -3'
miRNA:   3'- gCGUG----ACGCGC---UGGUUUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 28749 0.72 0.278285
Target:  5'- aGCaACUGCGCGA----GCGCCGCGUc -3'
miRNA:   3'- gCG-UGACGCGCUgguuUGCGGUGCAu -5'
17210 5' -56 NC_004333.2 + 18796 0.71 0.356824
Target:  5'- cCGCGCUuaucGCGCGGCCGcAgGgCGCGUGc -3'
miRNA:   3'- -GCGUGA----CGCGCUGGUuUgCgGUGCAU- -5'
17210 5' -56 NC_004333.2 + 3559 0.7 0.374288
Target:  5'- cCGCGCaGCGCGucgGCCGAccacauaguGCGCCACa-- -3'
miRNA:   3'- -GCGUGaCGCGC---UGGUU---------UGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 24296 0.78 0.113233
Target:  5'- gGCgACUGCGCGACCugGAACaGCCGCGa- -3'
miRNA:   3'- gCG-UGACGCGCUGG--UUUG-CGGUGCau -5'
17210 5' -56 NC_004333.2 + 36132 0.73 0.238138
Target:  5'- gGC-CUGCGCGACCGgcgcaaccuucAACGCCucguugACGUAg -3'
miRNA:   3'- gCGuGACGCGCUGGU-----------UUGCGG------UGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.