miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17212 5' -60.9 NC_004333.2 + 3075 0.66 0.380819
Target:  5'- cUACGUCGCGgcggacGCGC-CGGCGAGcgucuacGGCAUu -3'
miRNA:   3'- -AUGCGGCGC------UGCGaGCCGCUC-------CUGUA- -5'
17212 5' -60.9 NC_004333.2 + 46055 0.66 0.373022
Target:  5'- gGCGCCGaGugGCa-GGCcGGGACAc -3'
miRNA:   3'- aUGCGGCgCugCGagCCGcUCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 7699 0.66 0.373022
Target:  5'- gGCGUCGUaGCGgugaUCGGCGcGGACAg -3'
miRNA:   3'- aUGCGGCGcUGCg---AGCCGCuCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 48019 0.66 0.364486
Target:  5'- uUGC-CCGCG-CGCUCuGGCGuguuGGGCGc -3'
miRNA:   3'- -AUGcGGCGCuGCGAG-CCGCu---CCUGUa -5'
17212 5' -60.9 NC_004333.2 + 37443 0.66 0.356086
Target:  5'- cUGCGgCGUGACGaaCGGCGccGACAUu -3'
miRNA:   3'- -AUGCgGCGCUGCgaGCCGCucCUGUA- -5'
17212 5' -60.9 NC_004333.2 + 11770 0.66 0.347823
Target:  5'- cACGCCGCccGGCGCUgCGuCGAcGGAUAUg -3'
miRNA:   3'- aUGCGGCG--CUGCGA-GCcGCU-CCUGUA- -5'
17212 5' -60.9 NC_004333.2 + 47508 0.66 0.347004
Target:  5'- aUGCGUCGaacggauUGGCGC-CGGCGAGcGGCGa -3'
miRNA:   3'- -AUGCGGC-------GCUGCGaGCCGCUC-CUGUa -5'
17212 5' -60.9 NC_004333.2 + 4167 0.66 0.339698
Target:  5'- -cUGUCGCGccCGCUCGGUaAGGGCGg -3'
miRNA:   3'- auGCGGCGCu-GCGAGCCGcUCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 10869 0.66 0.339698
Target:  5'- gACGCCGCGcgggaagaACGC-CGGCGc-GACAg -3'
miRNA:   3'- aUGCGGCGC--------UGCGaGCCGCucCUGUa -5'
17212 5' -60.9 NC_004333.2 + 46356 0.67 0.331711
Target:  5'- aUGCGCCGCuGCGgaUUUGGCGcggccuAGGACAg -3'
miRNA:   3'- -AUGCGGCGcUGC--GAGCCGC------UCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 47786 0.67 0.323864
Target:  5'- gGCG-CGCGACGUgcCGGCGAGcGugAa -3'
miRNA:   3'- aUGCgGCGCUGCGa-GCCGCUC-CugUa -5'
17212 5' -60.9 NC_004333.2 + 31380 0.67 0.323864
Target:  5'- gGCGCCGU---GCUCGGCGucGGCGc -3'
miRNA:   3'- aUGCGGCGcugCGAGCCGCucCUGUa -5'
17212 5' -60.9 NC_004333.2 + 30614 0.67 0.316155
Target:  5'- gACGaUCGCGaagGCGCUCGaGUGGGGAUg- -3'
miRNA:   3'- aUGC-GGCGC---UGCGAGC-CGCUCCUGua -5'
17212 5' -60.9 NC_004333.2 + 43050 0.67 0.315392
Target:  5'- aGCGCCGCc-CGCUcguccgcCGGCGAGGGu-- -3'
miRNA:   3'- aUGCGGCGcuGCGA-------GCCGCUCCUgua -5'
17212 5' -60.9 NC_004333.2 + 19505 0.67 0.308586
Target:  5'- cGCGCUgGCGGCGCUCguGGcCGuauGGGCAa -3'
miRNA:   3'- aUGCGG-CGCUGCGAG--CC-GCu--CCUGUa -5'
17212 5' -60.9 NC_004333.2 + 20971 0.67 0.301156
Target:  5'- aACGCgCGCGGCGCg-GGCGAGuGGg-- -3'
miRNA:   3'- aUGCG-GCGCUGCGagCCGCUC-CUgua -5'
17212 5' -60.9 NC_004333.2 + 8046 0.67 0.293865
Target:  5'- -uCGCCGaCGA-GCUCGGCGgccuucaucGGGGCGa -3'
miRNA:   3'- auGCGGC-GCUgCGAGCCGC---------UCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 6668 0.68 0.279697
Target:  5'- gGCGCUggGCGGCGCgccguggCGGCGAugcGGGCu- -3'
miRNA:   3'- aUGCGG--CGCUGCGa------GCCGCU---CCUGua -5'
17212 5' -60.9 NC_004333.2 + 7484 0.68 0.272819
Target:  5'- gGCGCCGCG-CGUcgaaGGCaAGGACAc -3'
miRNA:   3'- aUGCGGCGCuGCGag--CCGcUCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 40095 0.68 0.266077
Target:  5'- cGCGCCGUGGCGC-CGcGCGAGuucCGUg -3'
miRNA:   3'- aUGCGGCGCUGCGaGC-CGCUCcu-GUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.