miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17215 5' -53.1 NC_004333.2 + 47787 0.77 0.231466
Target:  5'- cGGCGCGcGACGUGCCGGcgagCGUGAa--- -3'
miRNA:   3'- -CCGCGC-UUGCACGGCUa---GCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 46850 0.7 0.557883
Target:  5'- cGCuuGGACGUGCCGAgcagCGCGGc--- -3'
miRNA:   3'- cCGcgCUUGCACGGCUa---GCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 45766 0.66 0.817369
Target:  5'- aGGCGUGcguuGugGUaGCUGAUCGCGc---- -3'
miRNA:   3'- -CCGCGC----UugCA-CGGCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 45732 1.09 0.00141
Target:  5'- cGGCGCGAACGUGCCGAUCGCGAUAUAc -3'
miRNA:   3'- -CCGCGCUUGCACGGCUAGCGCUAUAU- -5'
17215 5' -53.1 NC_004333.2 + 43300 0.67 0.746564
Target:  5'- cGGCuauGCGcuCGUGCCGAUCGagcCGAc--- -3'
miRNA:   3'- -CCG---CGCuuGCACGGCUAGC---GCUauau -5'
17215 5' -53.1 NC_004333.2 + 41632 0.7 0.580065
Target:  5'- uGGCGCGuugaaGCCGGUCGUGAg--- -3'
miRNA:   3'- -CCGCGCuugcaCGGCUAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 41118 0.72 0.461955
Target:  5'- cGGCGCGaAACGUGUCGAcgaUCGUGc---- -3'
miRNA:   3'- -CCGCGC-UUGCACGGCU---AGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 39855 0.68 0.692114
Target:  5'- aGCGCGAGCGgcGUCGGUCG-GAUc-- -3'
miRNA:   3'- cCGCGCUUGCa-CGGCUAGCgCUAuau -5'
17215 5' -53.1 NC_004333.2 + 38559 0.7 0.591228
Target:  5'- aGGCGCu-GCGUGCCGucccAUUGCGGc--- -3'
miRNA:   3'- -CCGCGcuUGCACGGC----UAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 37807 0.67 0.767581
Target:  5'- cGGCGCGAuGCGaaGCgCG-UCGCGAUcgAg -3'
miRNA:   3'- -CCGCGCU-UGCa-CG-GCuAGCGCUAuaU- -5'
17215 5' -53.1 NC_004333.2 + 36211 0.67 0.746564
Target:  5'- aGGCGuUGAAgGUugcGCCGGUCGCGc---- -3'
miRNA:   3'- -CCGC-GCUUgCA---CGGCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 35488 0.71 0.514322
Target:  5'- gGGCcgGUGAGCGUGCCGccUGCGAg--- -3'
miRNA:   3'- -CCG--CGCUUGCACGGCuaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 33992 0.67 0.767581
Target:  5'- uGGuCGC--ACGUGCCGAUUGUGuUGUu -3'
miRNA:   3'- -CC-GCGcuUGCACGGCUAGCGCuAUAu -5'
17215 5' -53.1 NC_004333.2 + 33521 0.66 0.788016
Target:  5'- cGGCGCGccgcugccAAUGcUGCCGGacUCGCGGc--- -3'
miRNA:   3'- -CCGCGC--------UUGC-ACGGCU--AGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 33358 0.66 0.787009
Target:  5'- cGGCGCGccguCGUGgaacgccugcugcCCGAUCGCG-UAg- -3'
miRNA:   3'- -CCGCGCuu--GCAC-------------GGCUAGCGCuAUau -5'
17215 5' -53.1 NC_004333.2 + 32208 0.67 0.746564
Target:  5'- aGCGCGAugagcACGUcGCCGAgcgucuugagcUCGCGGa--- -3'
miRNA:   3'- cCGCGCU-----UGCA-CGGCU-----------AGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 31115 0.67 0.735867
Target:  5'- cGGCGCGAguuGC-UGCuCGcgCGCGAg--- -3'
miRNA:   3'- -CCGCGCU---UGcACG-GCuaGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 31010 0.68 0.680994
Target:  5'- cGGCGUaucgccGGACGUGaUCG-UCGCGAUGa- -3'
miRNA:   3'- -CCGCG------CUUGCAC-GGCuAGCGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 30650 0.66 0.807773
Target:  5'- cGGCGa-AGCG-GUCGAugUCGCGGUGUu -3'
miRNA:   3'- -CCGCgcUUGCaCGGCU--AGCGCUAUAu -5'
17215 5' -53.1 NC_004333.2 + 29951 0.77 0.250662
Target:  5'- uGCGCGAaaagcGCGUGCCGAgCGCGGc--- -3'
miRNA:   3'- cCGCGCU-----UGCACGGCUaGCGCUauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.