miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17287 3' -52.6 NC_004367.1 + 128423 0.66 0.972198
Target:  5'- cGAGcCCGagGCUUGCCAGA---GCGCUc -3'
miRNA:   3'- -CUC-GGCg-UGGACGGUCUuuuUGUGAc -5'
17287 3' -52.6 NC_004367.1 + 125514 0.66 0.972198
Target:  5'- cGAGcCCGagGCUUGCCAGA---GCGCUc -3'
miRNA:   3'- -CUC-GGCg-UGGACGGUCUuuuUGUGAc -5'
17287 3' -52.6 NC_004367.1 + 122605 0.66 0.972198
Target:  5'- cGAGcCCGagGCUUGCCAGA---GCGCUc -3'
miRNA:   3'- -CUC-GGCg-UGGACGGUCUuuuUGUGAc -5'
17287 3' -52.6 NC_004367.1 + 43174 0.66 0.972198
Target:  5'- uAGUgGCuACCUGCUGGuu--GCACUGa -3'
miRNA:   3'- cUCGgCG-UGGACGGUCuuuuUGUGAC- -5'
17287 3' -52.6 NC_004367.1 + 13393 0.66 0.972198
Target:  5'- cAGCCGUACUUGUCcuuGAGAcucGugGCUGc -3'
miRNA:   3'- cUCGGCGUGGACGGu--CUUU---UugUGAC- -5'
17287 3' -52.6 NC_004367.1 + 50642 0.66 0.972198
Target:  5'- cGAGCgGUugCUcgaaaauccagGCCAGccugaccaAGAGACACUGa -3'
miRNA:   3'- -CUCGgCGugGA-----------CGGUC--------UUUUUGUGAC- -5'
17287 3' -52.6 NC_004367.1 + 129612 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 130004 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 120884 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 123793 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 126703 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 127095 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 124186 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 121277 0.66 0.969204
Target:  5'- cGGGCCGCcuCCggGCCAGggGcugGACcccCUGa -3'
miRNA:   3'- -CUCGGCGu-GGa-CGGUCuuU---UUGu--GAC- -5'
17287 3' -52.6 NC_004367.1 + 50667 0.66 0.969204
Target:  5'- uGGUCGCagACCUGUCGGu--AACACUc -3'
miRNA:   3'- cUCGGCG--UGGACGGUCuuuUUGUGAc -5'
17287 3' -52.6 NC_004367.1 + 143156 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 148071 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 149382 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 149054 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
17287 3' -52.6 NC_004367.1 + 148726 0.66 0.965987
Target:  5'- --cCCGCGCCgGCCAGAAAAAa---- -3'
miRNA:   3'- cucGGCGUGGaCGGUCUUUUUgugac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.