miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17316 5' -46.1 NC_004367.1 + 131926 0.66 0.999961
Target:  5'- aCCAACAGuUGUUGa--CCAACGAACc -3'
miRNA:   3'- cGGUUGUUuACAACcgcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133294 0.66 0.999961
Target:  5'- cGgCAACGuuUGUUGGCGaCGACccuugAGACu -3'
miRNA:   3'- -CgGUUGUuuACAACCGCgGUUG-----UUUG- -5'
17316 5' -46.1 NC_004367.1 + 3114 0.66 0.999947
Target:  5'- aGCaaaGCGGguAUGUUGGCGCCAu----- -3'
miRNA:   3'- -CGgu-UGUU--UACAACCGCGGUuguuug -5'
17316 5' -46.1 NC_004367.1 + 133372 0.66 0.999947
Target:  5'- cGCCAACAAAcGUUG-C-CCAACAc-- -3'
miRNA:   3'- -CGGUUGUUUaCAACcGcGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 66646 0.66 0.999947
Target:  5'- -aCGGCuGGUGa-GGCGgCAACAGACa -3'
miRNA:   3'- cgGUUGuUUACaaCCGCgGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 68735 0.66 0.999929
Target:  5'- aGCCGggACAuuUGac-GCGCCGugGGACa -3'
miRNA:   3'- -CGGU--UGUuuACaacCGCGGUugUUUG- -5'
17316 5' -46.1 NC_004367.1 + 36272 0.66 0.999929
Target:  5'- aGCCGACAcgAGUGUgcacucauUGGCcacCCGACAcucaAGCa -3'
miRNA:   3'- -CGGUUGU--UUACA--------ACCGc--GGUUGU----UUG- -5'
17316 5' -46.1 NC_004367.1 + 124060 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 129878 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 133933 0.66 0.999905
Target:  5'- aCCAACAAcUGUgaccaaaGCaCCAACAAACg -3'
miRNA:   3'- cGGUUGUUuACAac-----CGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 74034 0.66 0.999905
Target:  5'- uGCCAuuguuucugGCAauGAUGUuaUGGUGUCGGCAGc- -3'
miRNA:   3'- -CGGU---------UGU--UUACA--ACCGCGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 121151 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 126969 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 135469 0.67 0.999875
Target:  5'- uGCCGAguAgcaGUGUUGuGCuGCCcgggGACAAGCg -3'
miRNA:   3'- -CGGUUguU---UACAAC-CG-CGG----UUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 87501 0.67 0.999837
Target:  5'- aCUAACAAAgagGUaUGGauagacgcuCGCCGGCAGACu -3'
miRNA:   3'- cGGUUGUUUa--CA-ACC---------GCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 35684 0.67 0.999788
Target:  5'- cGCCAuagaaAUAAGaGgcGGCGUCAGCAcuAACa -3'
miRNA:   3'- -CGGU-----UGUUUaCaaCCGCGGUUGU--UUG- -5'
17316 5' -46.1 NC_004367.1 + 70017 0.67 0.999788
Target:  5'- aGCCGugGGAga--GGCGCUAGCcguGGCa -3'
miRNA:   3'- -CGGUugUUUacaaCCGCGGUUGu--UUG- -5'
17316 5' -46.1 NC_004367.1 + 135958 0.68 0.999549
Target:  5'- uGCCGcccccucGCAGGgcc-GGCGUCAACAAAUa -3'
miRNA:   3'- -CGGU-------UGUUUacaaCCGCGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 131761 0.68 0.999446
Target:  5'- gGUCAACAAcUGUUGGUaaacGcCCAACAGc- -3'
miRNA:   3'- -CGGUUGUUuACAACCG----C-GGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 108997 0.68 0.999308
Target:  5'- uGCCAACcAGUGggugGaGCGCgcGCAGACa -3'
miRNA:   3'- -CGGUUGuUUACaa--C-CGCGguUGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.