miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17316 5' -46.1 NC_004367.1 + 36272 0.66 0.999929
Target:  5'- aGCCGACAcgAGUGUgcacucauUGGCcacCCGACAcucaAGCa -3'
miRNA:   3'- -CGGUUGU--UUACA--------ACCGc--GGUUGU----UUG- -5'
17316 5' -46.1 NC_004367.1 + 121151 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 124060 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 126969 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 129878 0.66 0.999905
Target:  5'- gGCUGucUAAGUGUcuUGGCaGCCAGCAAc- -3'
miRNA:   3'- -CGGUu-GUUUACA--ACCG-CGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 29824 0.69 0.997689
Target:  5'- gGCCAACAuaguuAGUGUcaUGGaCGCCcACGAu- -3'
miRNA:   3'- -CGGUUGU-----UUACA--ACC-GCGGuUGUUug -5'
17316 5' -46.1 NC_004367.1 + 35684 0.67 0.999788
Target:  5'- cGCCAuagaaAUAAGaGgcGGCGUCAGCAcuAACa -3'
miRNA:   3'- -CGGU-----UGUUUaCaaCCGCGGUUGU--UUG- -5'
17316 5' -46.1 NC_004367.1 + 70017 0.67 0.999788
Target:  5'- aGCCGugGGAga--GGCGCUAGCcguGGCa -3'
miRNA:   3'- -CGGUugUUUacaaCCGCGGUUGu--UUG- -5'
17316 5' -46.1 NC_004367.1 + 135469 0.67 0.999875
Target:  5'- uGCCGAguAgcaGUGUUGuGCuGCCcgggGACAAGCg -3'
miRNA:   3'- -CGGUUguU---UACAAC-CG-CGG----UUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 74034 0.66 0.999905
Target:  5'- uGCCAuuguuucugGCAauGAUGUuaUGGUGUCGGCAGc- -3'
miRNA:   3'- -CGGU---------UGU--UUACA--ACCGCGGUUGUUug -5'
17316 5' -46.1 NC_004367.1 + 133933 0.66 0.999905
Target:  5'- aCCAACAAcUGUgaccaaaGCaCCAACAAACg -3'
miRNA:   3'- cGGUUGUUuACAac-----CGcGGUUGUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133535 0.79 0.779914
Target:  5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 132950 0.79 0.779914
Target:  5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133591 0.8 0.769781
Target:  5'- uGCCAACGuuUGUUGGCGaggacaCAugAGACu -3'
miRNA:   3'- -CGGUUGUuuACAACCGCg-----GUugUUUG- -5'
17316 5' -46.1 NC_004367.1 + 133430 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133342 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133254 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133038 0.83 0.573851
Target:  5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133118 0.84 0.541185
Target:  5'- cGgCAACGuuUGUUGGCGCCAACAu-- -3'
miRNA:   3'- -CgGUUGUuuACAACCGCGGUUGUuug -5'
17316 5' -46.1 NC_004367.1 + 133294 0.66 0.999961
Target:  5'- cGgCAACGuuUGUUGGCGaCGACccuugAGACu -3'
miRNA:   3'- -CgGUUGUuuACAACCGCgGUUG-----UUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.