miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17317 3' -50.3 NC_004367.1 + 122757 0.66 0.996715
Target:  5'- gCUCGCCGggacuuACAGccGCGaUGGCcCCAGu -3'
miRNA:   3'- gGAGCGGU------UGUU--UGCaACCGuGGUUg -5'
17317 3' -50.3 NC_004367.1 + 38616 0.66 0.996715
Target:  5'- uCUUCGCCcauccccaugAGCGAuUGUUGGUACUGAa -3'
miRNA:   3'- -GGAGCGG----------UUGUUuGCAACCGUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 58979 0.66 0.996133
Target:  5'- gUCUCGCCAuuggaaACAGuuuuuACGUgaUGGUAgCCGAUg -3'
miRNA:   3'- -GGAGCGGU------UGUU-----UGCA--ACCGU-GGUUG- -5'
17317 3' -50.3 NC_004367.1 + 137387 0.66 0.996071
Target:  5'- gCUCGguaaaacCCGGCAAcCGUUGGCGuuCCGAg -3'
miRNA:   3'- gGAGC-------GGUUGUUuGCAACCGU--GGUUg -5'
17317 3' -50.3 NC_004367.1 + 92533 0.66 0.995469
Target:  5'- gCUaCGCCGGC---CGUUGGCAUUAGa -3'
miRNA:   3'- gGA-GCGGUUGuuuGCAACCGUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 96996 0.66 0.995469
Target:  5'- aCCUCGCUucACGAGCGaagcggcuggUUGG-ACUAGCu -3'
miRNA:   3'- -GGAGCGGu-UGUUUGC----------AACCgUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 2931 0.67 0.991826
Target:  5'- uUUC-CCAAUAGA---UGGCGCCAACa -3'
miRNA:   3'- gGAGcGGUUGUUUgcaACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 84662 0.67 0.986176
Target:  5'- gCUCuaaGCCAACAAA---UGGCGCCGuACa -3'
miRNA:   3'- gGAG---CGGUUGUUUgcaACCGUGGU-UG- -5'
17317 3' -50.3 NC_004367.1 + 133378 0.67 0.986176
Target:  5'- cUCUCGgCAACGuuUGUUGGCGagGACc -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUggUUG- -5'
17317 3' -50.3 NC_004367.1 + 132986 0.67 0.986176
Target:  5'- cUCUCGgCAACGuuUGUUGGCGagGACc -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUggUUG- -5'
17317 3' -50.3 NC_004367.1 + 133154 0.67 0.986176
Target:  5'- cUCUCGgCAACGuuUGUUGGCGagGACc -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUggUUG- -5'
17317 3' -50.3 NC_004367.1 + 133466 0.68 0.98438
Target:  5'- cUCUCGgCAACGuuUGUUaGUGCCAACg -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAAcCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133529 0.69 0.972643
Target:  5'- gUCUUGgggCAACGuuUGUUGGUGCCAACa -3'
miRNA:   3'- -GGAGCg--GUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 132947 0.69 0.969685
Target:  5'- uUUgGgCAACGuuUGUUGGUGCCAACa -3'
miRNA:   3'- gGAgCgGUUGUuuGCAACCGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133290 0.7 0.955572
Target:  5'- cUCUCGgCAACGuuUGUUGGCGaCGACc -3'
miRNA:   3'- -GGAGCgGUUGUuuGCAACCGUgGUUG- -5'
17317 3' -50.3 NC_004367.1 + 52261 0.7 0.947068
Target:  5'- ---aGCCAGCAGAuauCGUUGaGCGCUGGCg -3'
miRNA:   3'- ggagCGGUUGUUU---GCAAC-CGUGGUUG- -5'
17317 3' -50.3 NC_004367.1 + 133464 0.7 0.937554
Target:  5'- uCgUCGCCAACAAACGUU---GCCGAg -3'
miRNA:   3'- -GgAGCGGUUGUUUGCAAccgUGGUUg -5'
17317 3' -50.3 NC_004367.1 + 121001 0.71 0.932413
Target:  5'- cCCUCuagugGCCAACuAGAUGUcggGGCAgCCAGCc -3'
miRNA:   3'- -GGAG-----CGGUUG-UUUGCAa--CCGU-GGUUG- -5'
17317 3' -50.3 NC_004367.1 + 126819 0.71 0.932413
Target:  5'- cCCUCuagugGCCAACuAGAUGUcggGGCAgCCAGCc -3'
miRNA:   3'- -GGAG-----CGGUUG-UUUGCAa--CCGU-GGUUG- -5'
17317 3' -50.3 NC_004367.1 + 123910 0.71 0.932413
Target:  5'- cCCUCuagugGCCAACuAGAUGUcggGGCAgCCAGCc -3'
miRNA:   3'- -GGAG-----CGGUUG-UUUGCAa--CCGU-GGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.