Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17352 | 3' | -42.5 | NC_004367.1 | + | 31056 | 0.66 | 1 |
Target: 5'- uCAUCAgAUGCAAuacaUGGUGCAC-Ca -3' miRNA: 3'- -GUAGUgUAUGUUuuaaACCGUGUGcG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 11401 | 0.66 | 1 |
Target: 5'- -uUCACAgAUAAaccguaugcucgggGAUUUGGCcaGCGCGUg -3' miRNA: 3'- guAGUGUaUGUU--------------UUAAACCG--UGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 81145 | 0.66 | 1 |
Target: 5'- -------aACGGAG--UGGCACACGCc -3' miRNA: 3'- guaguguaUGUUUUaaACCGUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 41196 | 0.66 | 1 |
Target: 5'- ---uGCAUACAAAA-UUGGCACccauauCGUu -3' miRNA: 3'- guagUGUAUGUUUUaAACCGUGu-----GCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 75189 | 0.66 | 1 |
Target: 5'- uCAUUACAUGCAuuaaugugugugGGGUaagUGGgGCAUGUg -3' miRNA: 3'- -GUAGUGUAUGU------------UUUAa--ACCgUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 84715 | 0.67 | 1 |
Target: 5'- gGUCACAUcaugcGCGGAAcuuagccagaucUUUGGCACAUc- -3' miRNA: 3'- gUAGUGUA-----UGUUUU------------AAACCGUGUGcg -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 51949 | 0.67 | 1 |
Target: 5'- --cCACGUGCGAcaGAUUUGGagaagauCACGUu -3' miRNA: 3'- guaGUGUAUGUU--UUAAACCgu-----GUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 72020 | 0.68 | 1 |
Target: 5'- --cCAgGUGCAGGGUUcaugagauggGGCugACGCu -3' miRNA: 3'- guaGUgUAUGUUUUAAa---------CCGugUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 137928 | 0.68 | 1 |
Target: 5'- cCAUgGCGgACGAGGUaaaaUUGGUGuCACGCg -3' miRNA: 3'- -GUAgUGUaUGUUUUA----AACCGU-GUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 133654 | 0.66 | 1 |
Target: 5'- -cUCGCcaACAGAcgUUGGCACuaacaaACGUu -3' miRNA: 3'- guAGUGuaUGUUUuaAACCGUG------UGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 33200 | 0.67 | 1 |
Target: 5'- uCAUgACGUA--AGAUUUGGUAacaGCGCc -3' miRNA: 3'- -GUAgUGUAUguUUUAAACCGUg--UGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 112289 | 0.67 | 1 |
Target: 5'- uCAUCACAUACAcgGUUUucuaGGUguucaccAUugGCu -3' miRNA: 3'- -GUAGUGUAUGUuuUAAA----CCG-------UGugCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 70822 | 0.67 | 1 |
Target: 5'- aCAUCGuCAUGaAAAAUUgaGGCGC-CGCa -3' miRNA: 3'- -GUAGU-GUAUgUUUUAAa-CCGUGuGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 81644 | 0.67 | 1 |
Target: 5'- ---uGCA-GCAAAug-UGGCACugGCc -3' miRNA: 3'- guagUGUaUGUUUuaaACCGUGugCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 133758 | 0.67 | 1 |
Target: 5'- -cUCGCcaACAAAcgUUGGCACcaacaaACGUg -3' miRNA: 3'- guAGUGuaUGUUUuaAACCGUG------UGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 131074 | 0.67 | 1 |
Target: 5'- uGUCuACAUACAGAAg--GGuCACACcCa -3' miRNA: 3'- gUAG-UGUAUGUUUUaaaCC-GUGUGcG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 14042 | 0.68 | 0.999999 |
Target: 5'- gUAUUGCAUACAGGAUUcaGUACugGUu -3' miRNA: 3'- -GUAGUGUAUGUUUUAAacCGUGugCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 9035 | 0.69 | 0.999997 |
Target: 5'- aAUCGCGgaccaGCGAAAUgaacuGUACACGCg -3' miRNA: 3'- gUAGUGUa----UGUUUUAaac--CGUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 10282 | 0.69 | 0.999997 |
Target: 5'- cCGUCACAguaUACAAcGggUGGUAUGCGg -3' miRNA: 3'- -GUAGUGU---AUGUUuUaaACCGUGUGCg -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 133882 | 0.69 | 0.999994 |
Target: 5'- --aCACAUACAGAGcaaaaacgUUGGCAC-CaGCa -3' miRNA: 3'- guaGUGUAUGUUUUa-------AACCGUGuG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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