miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17364 5' -53.1 NC_004367.1 + 7276 0.66 0.956639
Target:  5'- cUAgGGCgAGACCCaUAAuCACCCUGCc -3'
miRNA:   3'- aAUgUUGgUCUGGGcAUU-GUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 7853 0.66 0.960435
Target:  5'- -cACAGCUcgccaAGAUagaGUAACGCCCCAg -3'
miRNA:   3'- aaUGUUGG-----UCUGgg-CAUUGUGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 11192 0.66 0.960435
Target:  5'- -cGCGACCAacCCCcUGACACCgCCAa -3'
miRNA:   3'- aaUGUUGGUcuGGGcAUUGUGG-GGUg -5'
17364 5' -53.1 NC_004367.1 + 11691 0.69 0.869726
Target:  5'- -gGCAGCCacaGGAUaaCCGU-ACACCCCAg -3'
miRNA:   3'- aaUGUUGG---UCUG--GGCAuUGUGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 19212 0.67 0.94379
Target:  5'- gUUGCGACCGGugggugcuccGCCCaaacauguGgcACGCCCCAg -3'
miRNA:   3'- -AAUGUUGGUC----------UGGG--------CauUGUGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 23443 0.73 0.671683
Target:  5'- ---gGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaugUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 23481 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 23521 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 23542 0.75 0.576694
Target:  5'- --nCGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aauGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 48759 0.66 0.960435
Target:  5'- --uCGGCCAGuuCCagguGUAACACCCCu- -3'
miRNA:   3'- aauGUUGGUCugGG----CAUUGUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 56823 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 56863 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 56902 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 56942 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 56982 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 57022 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 64184 0.69 0.853998
Target:  5'- -aACAACCGGcaccauGCCUGUGGCACaaaCCCAg -3'
miRNA:   3'- aaUGUUGGUC------UGGGCAUUGUG---GGGUg -5'
17364 5' -53.1 NC_004367.1 + 66400 0.67 0.939007
Target:  5'- aUGCAggaaucaauACCGGAgCCGUuuuCACCCCc- -3'
miRNA:   3'- aAUGU---------UGGUCUgGGCAuu-GUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 82494 1.08 0.005114
Target:  5'- gUUACAACCAGACCCGUAACACCCCACa -3'
miRNA:   3'- -AAUGUUGGUCUGGGCAUUGUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 85821 0.73 0.696815
Target:  5'- gUACAGCgAGGCauaacugguagauauCUGUAACACUCCACa -3'
miRNA:   3'- aAUGUUGgUCUG---------------GGCAUUGUGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.