miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17364 5' -53.1 NC_004367.1 + 93686 0.66 0.956639
Target:  5'- -cAC-ACCAGACuuGUGuugcaaaaguCGCCCCAa -3'
miRNA:   3'- aaUGuUGGUCUGggCAUu---------GUGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 99185 0.66 0.963995
Target:  5'- aUugAGCCAuuugccGCCCccuaAGCACCCCGCu -3'
miRNA:   3'- aAugUUGGUc-----UGGGca--UUGUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 103097 0.66 0.967325
Target:  5'- aUGCAaaauGCCGGACCauuuUAugGCCCCu- -3'
miRNA:   3'- aAUGU----UGGUCUGGgc--AUugUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 110873 0.73 0.692645
Target:  5'- ---aAGCCAGACgUGUGugGCCUCACu -3'
miRNA:   3'- aaugUUGGUCUGgGCAUugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 114233 0.68 0.889504
Target:  5'- aUUACAGCCAucCCCaaacaauucuucuugAACACCCCAUa -3'
miRNA:   3'- -AAUGUUGGUcuGGGca-------------UUGUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 121027 0.67 0.923133
Target:  5'- -gGCAGCCAGcCaCCGUGu--CCCCAg -3'
miRNA:   3'- aaUGUUGGUCuG-GGCAUuguGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 121058 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 121103 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 122468 0.69 0.869726
Target:  5'- -aGCAGCCuucacGGaACCCGcggGACACCCCu- -3'
miRNA:   3'- aaUGUUGG-----UC-UGGGCa--UUGUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 123936 0.67 0.923133
Target:  5'- -gGCAGCCAGcCaCCGUGu--CCCCAg -3'
miRNA:   3'- aaUGUUGGUCuG-GGCAUuguGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 123967 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 124012 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 125377 0.69 0.869726
Target:  5'- -aGCAGCCuucacGGaACCCGcggGACACCCCu- -3'
miRNA:   3'- aaUGUUGG-----UC-UGGGCa--UUGUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 126845 0.67 0.923133
Target:  5'- -gGCAGCCAGcCaCCGUGu--CCCCAg -3'
miRNA:   3'- aaUGUUGGUCuG-GGCAUuguGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 126876 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 126921 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 128286 0.69 0.869726
Target:  5'- -aGCAGCCuucacGGaACCCGcggGACACCCCu- -3'
miRNA:   3'- aaUGUUGG-----UC-UGGGCa--UUGUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 129754 0.67 0.923133
Target:  5'- -gGCAGCCAGcCaCCGUGu--CCCCAg -3'
miRNA:   3'- aaUGUUGGUCuG-GGCAUuguGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 129785 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 129830 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.