miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17364 5' -53.1 NC_004367.1 + 56902 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 7276 0.66 0.956639
Target:  5'- cUAgGGCgAGACCCaUAAuCACCCUGCc -3'
miRNA:   3'- aAUgUUGgUCUGGGcAUU-GUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 103097 0.66 0.967325
Target:  5'- aUGCAaaauGCCGGACCauuuUAugGCCCCu- -3'
miRNA:   3'- aAUGU----UGGUCUGGgc--AUugUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 82494 1.08 0.005114
Target:  5'- gUUACAACCAGACCCGUAACACCCCACa -3'
miRNA:   3'- -AAUGUUGGUCUGGGCAUUGUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 23481 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 23521 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 56823 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 56863 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 7853 0.66 0.960435
Target:  5'- -cACAGCUcgccaAGAUagaGUAACGCCCCAg -3'
miRNA:   3'- aaUGUUGG-----UCUGgg-CAUUGUGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 121058 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 123967 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 126876 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 129785 0.66 0.960435
Target:  5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3'
miRNA:   3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 48759 0.66 0.960435
Target:  5'- --uCGGCCAGuuCCagguGUAACACCCCu- -3'
miRNA:   3'- aauGUUGGUCugGG----CAUUGUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 131448 0.66 0.960066
Target:  5'- -cACA--CGGGCUCGUAACaaaagaaugccccGCCCCACu -3'
miRNA:   3'- aaUGUugGUCUGGGCAUUG-------------UGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 66400 0.67 0.939007
Target:  5'- aUGCAggaaucaauACCGGAgCCGUuuuCACCCCc- -3'
miRNA:   3'- aAUGU---------UGGUCUgGGCAuu-GUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 122468 0.69 0.869726
Target:  5'- -aGCAGCCuucacGGaACCCGcggGACACCCCu- -3'
miRNA:   3'- aaUGUUGG-----UC-UGGGCa--UUGUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 125377 0.69 0.869726
Target:  5'- -aGCAGCCuucacGGaACCCGcggGACACCCCu- -3'
miRNA:   3'- aaUGUUGG-----UC-UGGGCa--UUGUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 128286 0.69 0.869726
Target:  5'- -aGCAGCCuucacGGaACCCGcggGACACCCCu- -3'
miRNA:   3'- aaUGUUGG-----UC-UGGGCa--UUGUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 85821 0.73 0.696815
Target:  5'- gUACAGCgAGGCauaacugguagauauCUGUAACACUCCACa -3'
miRNA:   3'- aAUGUUGgUCUG---------------GGCAUUGUGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.