miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17364 5' -53.1 NC_004367.1 + 126845 0.67 0.923133
Target:  5'- -gGCAGCCAGcCaCCGUGu--CCCCAg -3'
miRNA:   3'- aaUGUUGGUCuG-GGCAUuguGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 56942 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 56902 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 56863 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 56823 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 23521 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 23481 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 82494 1.08 0.005114
Target:  5'- gUUACAACCAGACCCGUAACACCCCACa -3'
miRNA:   3'- -AAUGUUGGUCUGGGCAUUGUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 56982 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 123936 0.67 0.923133
Target:  5'- -gGCAGCCAGcCaCCGUGu--CCCCAg -3'
miRNA:   3'- aaUGUUGGUCuG-GGCAUuguGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 19212 0.67 0.94379
Target:  5'- gUUGCGACCGGugggugcuccGCCCaaacauguGgcACGCCCCAg -3'
miRNA:   3'- -AAUGUUGGUC----------UGGG--------CauUGUGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 23443 0.73 0.671683
Target:  5'- ---gGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaugUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 57022 0.8 0.334242
Target:  5'- -cACGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 64184 0.69 0.853998
Target:  5'- -aACAACCGGcaccauGCCUGUGGCACaaaCCCAg -3'
miRNA:   3'- aaUGUUGGUC------UGGGCAUUGUG---GGGUg -5'
17364 5' -53.1 NC_004367.1 + 121027 0.67 0.923133
Target:  5'- -gGCAGCCAGcCaCCGUGu--CCCCAg -3'
miRNA:   3'- aaUGUUGGUCuG-GGCAUuguGGGGUg -5'
17364 5' -53.1 NC_004367.1 + 23542 0.75 0.576694
Target:  5'- --nCGGCCGGGCCUGga--GCCCCACg -3'
miRNA:   3'- aauGUUGGUCUGGGCauugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 131514 0.67 0.939007
Target:  5'- -aGCAACCAGAcaacuauuCCUGggcuUAUCCCACa -3'
miRNA:   3'- aaUGUUGGUCU--------GGGCauu-GUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 103097 0.66 0.967325
Target:  5'- aUGCAaaauGCCGGACCauuuUAugGCCCCu- -3'
miRNA:   3'- aAUGU----UGGUCUGGgc--AUugUGGGGug -5'
17364 5' -53.1 NC_004367.1 + 110873 0.73 0.692645
Target:  5'- ---aAGCCAGACgUGUGugGCCUCACu -3'
miRNA:   3'- aaugUUGGUCUGgGCAUugUGGGGUG- -5'
17364 5' -53.1 NC_004367.1 + 114233 0.68 0.889504
Target:  5'- aUUACAGCCAucCCCaaacaauucuucuugAACACCCCAUa -3'
miRNA:   3'- -AAUGUUGGUcuGGGca-------------UUGUGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.