Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17364 | 5' | -53.1 | NC_004367.1 | + | 99185 | 0.66 | 0.963995 |
Target: 5'- aUugAGCCAuuugccGCCCccuaAGCACCCCGCu -3' miRNA: 3'- aAugUUGGUc-----UGGGca--UUGUGGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 85821 | 0.73 | 0.696815 |
Target: 5'- gUACAGCgAGGCauaacugguagauauCUGUAACACUCCACa -3' miRNA: 3'- aAUGUUGgUCUG---------------GGCAUUGUGGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 128286 | 0.69 | 0.869726 |
Target: 5'- -aGCAGCCuucacGGaACCCGcggGACACCCCu- -3' miRNA: 3'- aaUGUUGG-----UC-UGGGCa--UUGUGGGGug -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 125377 | 0.69 | 0.869726 |
Target: 5'- -aGCAGCCuucacGGaACCCGcggGACACCCCu- -3' miRNA: 3'- aaUGUUGG-----UC-UGGGCa--UUGUGGGGug -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 122468 | 0.69 | 0.869726 |
Target: 5'- -aGCAGCCuucacGGaACCCGcggGACACCCCu- -3' miRNA: 3'- aaUGUUGG-----UC-UGGGCa--UUGUGGGGug -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 11691 | 0.69 | 0.869726 |
Target: 5'- -gGCAGCCacaGGAUaaCCGU-ACACCCCAg -3' miRNA: 3'- aaUGUUGG---UCUG--GGCAuUGUGGGGUg -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 66400 | 0.67 | 0.939007 |
Target: 5'- aUGCAggaaucaauACCGGAgCCGUuuuCACCCCc- -3' miRNA: 3'- aAUGU---------UGGUCUgGGCAuu-GUGGGGug -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 131448 | 0.66 | 0.960066 |
Target: 5'- -cACA--CGGGCUCGUAACaaaagaaugccccGCCCCACu -3' miRNA: 3'- aaUGUugGUCUGGGCAUUG-------------UGGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 48759 | 0.66 | 0.960435 |
Target: 5'- --uCGGCCAGuuCCagguGUAACACCCCu- -3' miRNA: 3'- aauGUUGGUCugGG----CAUUGUGGGGug -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 129785 | 0.66 | 0.960435 |
Target: 5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3' miRNA: 3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 126876 | 0.66 | 0.960435 |
Target: 5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3' miRNA: 3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 123967 | 0.66 | 0.960435 |
Target: 5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3' miRNA: 3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 121058 | 0.66 | 0.960435 |
Target: 5'- --cCAGCCccuGGCCCGgagGCGgCCCGCc -3' miRNA: 3'- aauGUUGGu--CUGGGCau-UGUgGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 7853 | 0.66 | 0.960435 |
Target: 5'- -cACAGCUcgccaAGAUagaGUAACGCCCCAg -3' miRNA: 3'- aaUGUUGG-----UCUGgg-CAUUGUGGGGUg -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 56902 | 0.8 | 0.334242 |
Target: 5'- -cACGGCCGGGCCUGga--GCCCCACg -3' miRNA: 3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 56863 | 0.8 | 0.334242 |
Target: 5'- -cACGGCCGGGCCUGga--GCCCCACg -3' miRNA: 3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 56823 | 0.8 | 0.334242 |
Target: 5'- -cACGGCCGGGCCUGga--GCCCCACg -3' miRNA: 3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 23521 | 0.8 | 0.334242 |
Target: 5'- -cACGGCCGGGCCUGga--GCCCCACg -3' miRNA: 3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 23481 | 0.8 | 0.334242 |
Target: 5'- -cACGGCCGGGCCUGga--GCCCCACg -3' miRNA: 3'- aaUGUUGGUCUGGGCauugUGGGGUG- -5' |
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17364 | 5' | -53.1 | NC_004367.1 | + | 103097 | 0.66 | 0.967325 |
Target: 5'- aUGCAaaauGCCGGACCauuuUAugGCCCCu- -3' miRNA: 3'- aAUGU----UGGUCUGGgc--AUugUGGGGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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