Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17366 | 5' | -56.5 | NC_004367.1 | + | 116790 | 0.66 | 0.889528 |
Target: 5'- aGGCCUCCCGGGuuuuccggguGCccAGCcuCCCGGGu -3' miRNA: 3'- -UCGGAGGGUCUuu--------UGa-UCG--GGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 147711 | 0.66 | 0.875469 |
Target: 5'- uGGCCUCCaccgccgaGGAAGGCguccCCCCGGc- -3' miRNA: 3'- -UCGGAGGg-------UCUUUUGauc-GGGGCCuc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 14664 | 0.66 | 0.868108 |
Target: 5'- cAGCUUUCUAGcAGACUGGCCa-GGAa -3' miRNA: 3'- -UCGGAGGGUCuUUUGAUCGGggCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 146728 | 0.66 | 0.868108 |
Target: 5'- uGGCCUCCacccgccgaGGAAGGCgucCCCCGGc- -3' miRNA: 3'- -UCGGAGGg--------UCUUUUGaucGGGGCCuc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 63468 | 0.67 | 0.828216 |
Target: 5'- uGGCgUCaCAGuc-ACUGGCCCUGGAu -3' miRNA: 3'- -UCGgAGgGUCuuuUGAUCGGGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 129761 | 0.67 | 0.819667 |
Target: 5'- cGCCggCCUAGucc-CUAGCCUCGGGu -3' miRNA: 3'- uCGGa-GGGUCuuuuGAUCGGGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 125261 | 0.67 | 0.802063 |
Target: 5'- aGGUCUCC--GAAGACUgagGGuCCCUGGAGa -3' miRNA: 3'- -UCGGAGGguCUUUUGA---UC-GGGGCCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 122352 | 0.67 | 0.802063 |
Target: 5'- aGGUCUCC--GAAGACUgagGGuCCCUGGAGa -3' miRNA: 3'- -UCGGAGGguCUUUUGA---UC-GGGGCCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 128170 | 0.67 | 0.802063 |
Target: 5'- aGGUCUCC--GAAGACUgagGGuCCCUGGAGa -3' miRNA: 3'- -UCGGAGGguCUUUUGA---UC-GGGGCCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 137593 | 0.68 | 0.765063 |
Target: 5'- uGGCgaCCCGGAGuuuCUccGGCCUCGGAa -3' miRNA: 3'- -UCGgaGGGUCUUuu-GA--UCGGGGCCUc -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 64541 | 0.69 | 0.745811 |
Target: 5'- aGGCauguaUUCAGAAAcGCUGGCCCCGaGAGg -3' miRNA: 3'- -UCGga---GGGUCUUU-UGAUCGGGGC-CUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 129617 | 0.69 | 0.735046 |
Target: 5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3' miRNA: 3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 126708 | 0.69 | 0.735046 |
Target: 5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3' miRNA: 3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 123798 | 0.69 | 0.735046 |
Target: 5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3' miRNA: 3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 129999 | 0.69 | 0.735046 |
Target: 5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3' miRNA: 3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 127090 | 0.69 | 0.735046 |
Target: 5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3' miRNA: 3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 124181 | 0.69 | 0.735046 |
Target: 5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3' miRNA: 3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 121272 | 0.69 | 0.735046 |
Target: 5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3' miRNA: 3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 120889 | 0.69 | 0.735046 |
Target: 5'- cGCCUCCgGGccaGGGGCUGGaCCCCcugaccgGGAGg -3' miRNA: 3'- uCGGAGGgUC---UUUUGAUC-GGGG-------CCUC- -5' |
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17366 | 5' | -56.5 | NC_004367.1 | + | 116662 | 0.69 | 0.700127 |
Target: 5'- aGGCCUCCCGGcccauaccgcgguccAGAACcgcccAGCuCCUGGAGc -3' miRNA: 3'- -UCGGAGGGUC---------------UUUUGa----UCG-GGGCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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