miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17368 3' -53.4 NC_004367.1 + 1145 0.66 0.96937
Target:  5'- ----cAGCCccacUCCCGCCGGUguuuaucgACAAauGGCu -3'
miRNA:   3'- ucuauUCGG----AGGGUGGCCA--------UGUU--CCG- -5'
17368 3' -53.4 NC_004367.1 + 78302 0.66 0.967193
Target:  5'- uGAUGAGCCUCuuCCuucuacgucaucccaACCGGgGCGucaacgaAGGCa -3'
miRNA:   3'- uCUAUUCGGAG--GG---------------UGGCCaUGU-------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 92355 0.66 0.962863
Target:  5'- uGGUucGCCUCCUgcuGCuCGGUugGgagcugGGGCu -3'
miRNA:   3'- uCUAuuCGGAGGG---UG-GCCAugU------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 40790 0.66 0.962863
Target:  5'- -----cGCCUCCUuccuaaccuguCCGGUACAgacccAGGCc -3'
miRNA:   3'- ucuauuCGGAGGGu----------GGCCAUGU-----UCCG- -5'
17368 3' -53.4 NC_004367.1 + 114155 0.66 0.959274
Target:  5'- cAGAUuauAGUCUUCacaaCACCGaGUGCAGcGGCa -3'
miRNA:   3'- -UCUAu--UCGGAGG----GUGGC-CAUGUU-CCG- -5'
17368 3' -53.4 NC_004367.1 + 49051 0.66 0.959274
Target:  5'- -----uGCCUCCgGCCG-UGCAcAGGCc -3'
miRNA:   3'- ucuauuCGGAGGgUGGCcAUGU-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 122278 0.67 0.950975
Target:  5'- gAGAUGGGUCaggggugUCCCGCgGGUuccgugAAGGCu -3'
miRNA:   3'- -UCUAUUCGG-------AGGGUGgCCAug----UUCCG- -5'
17368 3' -53.4 NC_004367.1 + 125187 0.67 0.950975
Target:  5'- gAGAUGGGUCaggggugUCCCGCgGGUuccgugAAGGCu -3'
miRNA:   3'- -UCUAUUCGG-------AGGGUGgCCAug----UUCCG- -5'
17368 3' -53.4 NC_004367.1 + 128096 0.67 0.950975
Target:  5'- gAGAUGGGUCaggggugUCCCGCgGGUuccgugAAGGCu -3'
miRNA:   3'- -UCUAUUCGG-------AGGGUGgCCAug----UUCCG- -5'
17368 3' -53.4 NC_004367.1 + 115982 0.67 0.937766
Target:  5'- cGGUAGGUaccCCUACCGGUAgGuauugguacuacAGGCg -3'
miRNA:   3'- uCUAUUCGga-GGGUGGCCAUgU------------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 22926 0.67 0.937766
Target:  5'- cGGUAGGUaccCCUACCGGUAgGuauugguacuacAGGCg -3'
miRNA:   3'- uCUAUUCGga-GGGUGGCCAUgU------------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 140670 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 142636 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 142308 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 144274 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 143946 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 143619 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 143291 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 141653 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5'
17368 3' -53.4 NC_004367.1 + 142963 0.67 0.934775
Target:  5'- cGGGUGgaGGCCacgcCCCccucacuuuuuucugGCCGGcGCGGGGCa -3'
miRNA:   3'- -UCUAU--UCGGa---GGG---------------UGGCCaUGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.